Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211520g00026 ATGATGACTCCAAATTTGAACTTGGAACCTGAAAATTACTCAGAAGGAAGCAGCCAAGTAGCTTCGAGCGTATCGCTCCAAGAAACATCCCCTGAGCTCAACAAGGAAAGCACCACTGCTTCCTCCTGTCTTACAAATCTTACTAAGGCCGAAGGTGATCCTGGCTCCGTCACCCTTGACTTGACACTCAACTTCAATGCAAGTGATGGCGAGTTAAAGGGTACTAGTGATGCTAGCAGTGAAGTGGGACCGGAAGCTTTTGCTTCGGGATCAGCAAGTCCCAGGGTGTTCTCTTGTAATTACTGCAGGAGGAAGTTCTTTAGCTCACAGGCTCTTGGGGGTCACCAGAATGCTCACAAAAGGGAGAGGACAATGGCGAAGCGAGCAATGCGAATGGGGATGTTCACCGAGAGGTATACAAGCTTAGCATCTCTCCCTCTTCATGGTTCACCTTTCCGGTCTCTTGGAATAGAAGCTCATTCTGCAATGCACCATAGACCTATGCCACAAGTGAGGGCTCCTGATTTGAGAGCCGGGGCTAAATTTGAGAGGAACCATTTCGGATCACCCATGTTCATGGAAGATGATGATGTTGGGTTGTTTTGGCCAGGCAGTTTCCGACAGGTCAACCAGCAAGCCGGTATTAACATGGTACATGCTCAAACATCCAATACTAATAGCTATGCTCCTATGGCGCCTCCTCAACCGAAAGCATCGACATCTCCGGATCTCACCCTGAAGCTTTAG 747 0.4859 MMTPNLNLEPENYSEGSSQVASSVSLQETSPELNKESTTASSCLTNLTKAEGDPGSVTLDLTLNFNASDGELKGTSDASSEVGPEAFASGSASPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGIEAHSAMHHRPMPQVRAPDLRAGAKFERNHFGSPMFMEDDDVGLFWPGSFRQVNQQAGINMVHAQTSNTNSYAPMAPPQPKASTSPDLTLKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211520g00026 248 Gene3D Classic Zinc Finger 88 143 - -
Stsc211520g00026 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Stsc211520g00026 248 MobiDBLite consensus disorder prediction 1 49 - -
Stsc211520g00026 248 SUPERFAMILY beta-beta-alpha zinc fingers 94 125 IPR036236 -
Stsc211520g00026 248 MobiDBLite consensus disorder prediction 73 92 - -
Stsc211520g00026 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 189 IPR044246 GO:0009788
Stsc211520g00026 248 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Stsc211520g00026 248 MobiDBLite consensus disorder prediction 224 248 - -
Stsc211520g00026 248 FunFam Zinc finger protein 2 75 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211520g00026 Stsc-Chr211520 137058 140158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211520g00026 91 248 C2H2 Transcription Factor Family AT1G66140 46.277 1.30e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211520g00026 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211520g00026 - - gmx:100775305 377.481