Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211520g00014 ATGTGTTTCCGGTGGTGGTCAAAAAGCTCAAGGGACAATAATAATAAACCCGAAAACTCCACTACGTGCCGCAACTTCACCATCGCCGAGATAAGATCTGCCACCAATAACTTCGACCAAGCTTTAATCATAGGCCGCGGAGGCTTCGGTAACGTCTATAAAGGCCAGTTGCAGAAGCACCGCGCCCCCGTGGCCATCAAGCGCCTCAAGCAGGGCTCCAATCAAGGAATCCGCGAGTTCGAAACGGAGATCAAGATGCTGTCCCACCTCCGCCACCCTCACCTCGTCTCCCTCATCGGCTACTGCCAAGACCCCACGGAGATGATCCTGGTGTACGACTTCATGGGGCGTGGAACCCTACGCGACCACCTGTACGACTACGAGAGCGGGAGCAAGAAGAAAGAAGCCCTGTCGTGGAAGAAACGGTTAGAGATATGCCTTGATGCGGCGCGTGGGCTTCACTTCCTCCACAGAGAGAAGGTGATCCACCGGGACGTGAAGAGCACCAACATACTGCTGGATGATGAGTGGATCGCGAAAGTTGCGGATTTCGGTTTATCGAAGGACGGGCCGAATGGGTCCCACGTGACAACGGAAGTGAAGGGTAGCGTTGGGTATTTGGATCCGGAGTACTACATGAGTCAGTGGCTGAGTCAGAAGTCTGACGTGTACTCTTTCGGGGTTGTTTTGTTGGAGGTGTTGAGTGGGAGGCCCCCTGTCATCAGGCATGAGGAGTCCCTTGTTACGTGGGTTAAGGGGTGTTATCAAGATGGCAAGATTGATCGGACGGTGGATCCTGCCTTGCAGGGTAGCATTGGGCACAAGTGTTTGAACAAGTTTGTTGAGGTTGCCTTGAGTTGTTTGAACCAATACGGGAAGGAACGTCCACTCATGGAGGATGTGGTGAAGGGCTTGGAGTGTGCGTTGAGGTTGCAGCACAACAACAAGACTCTTGATGACGTGGCAGTTAGCTTCACCGTTGTTGTGGGCCCCGAACATGATGATTATTATGGAGAAGACTTTGTTGATGATTCTCGGGGTGGTCGGGGAGTGGTGATGAGCGACTCTCAGTGTACTATTACTTCTACTACCACTACTGAAAGTAGTAATGCCGTAACCACTACCGCAACTACAACCACCATCACATCCAAAGAGGATGAGCAAGCTTTGGTGATGCATGGGGTCTTCTCTCCAACAACTCCTTGA 1206 0.5207 MCFRWWSKSSRDNNNKPENSTTCRNFTIAEIRSATNNFDQALIIGRGGFGNVYKGQLQKHRAPVAIKRLKQGSNQGIREFETEIKMLSHLRHPHLVSLIGYCQDPTEMILVYDFMGRGTLRDHLYDYESGSKKKEALSWKKRLEICLDAARGLHFLHREKVIHRDVKSTNILLDDEWIAKVADFGLSKDGPNGSHVTTEVKGSVGYLDPEYYMSQWLSQKSDVYSFGVVLLEVLSGRPPVIRHEESLVTWVKGCYQDGKIDRTVDPALQGSIGHKCLNKFVEVALSCLNQYGKERPLMEDVVKGLECALRLQHNNKTLDDVAVSFTVVVGPEHDDYYGEDFVDDSRGGRGVVMSDSQCTITSTTTTESSNAVTTTATTTTITSKEDEQALVMHGVFSPTTP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211520g00014 401 MobiDBLite consensus disorder prediction 1 20 - -
Stsc211520g00014 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc211520g00014 401 Gene3D Transferase(Phosphotransferase) domain 1 115 328 - -
Stsc211520g00014 401 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Stsc211520g00014 401 SMART serkin_6 38 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211520g00014 401 PANTHER OS07G0166700 PROTEIN 22 312 IPR045272 GO:0004714|GO:0006468
Stsc211520g00014 401 Gene3D Phosphorylase Kinase; domain 1 22 114 - -
Stsc211520g00014 401 CDD STKc_IRAK 44 306 - -
Stsc211520g00014 401 FunFam Receptor-like protein kinase FERONIA 9 114 - -
Stsc211520g00014 401 ProSiteProfiles Protein kinase domain profile. 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211520g00014 401 FunFam Receptor-like protein kinase FERONIA 115 323 - -
Stsc211520g00014 401 Pfam Protein tyrosine and serine/threonine kinase 43 304 IPR001245 GO:0004672|GO:0006468
Stsc211520g00014 401 SUPERFAMILY Protein kinase-like (PK-like) 21 303 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211520g00014 Stsc-Chr211520 50036 51241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211520g00014 20 314 Receptor kinase-like Gene Family AT3G51550 55.263 6.20e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc211520g00014 PK_Tyr_Ser-Thr 6.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211520g00014 - - adu:107482052 570.081