Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211520g00001 ATGAGAAGGCTGATAGAGTTGAAGAAACAGTGCAAAAGGAAGGAGTTCAACCAANNNNNNNNNNGTGCTTCAACAACTCCAAAAGCAAAGAAACCAAGGAAACCAAAGGAGAATAGCAATGCTCCTGTTCAACGATCAAAGCCCATGAAGACAATTGAGTTTGTAATAAATGGAATGGATATGGACATTTCCAGTTTACCCATTCCAGTTTGTTCATGTACTGGGACTCCTCAGCAGTGTTACCGCTGGGGCTGTGGAGGATGGCAGTCTGCTTGTTGTACTACAAATGTGTCAACATATCCATTGCCAATGAGCATGAAACGGCGTGGGGCAAGGATAGCTGGACGGAAAATGAGCCAGGGTGCTTTTAAGAAGGTTTTAGAGAAATTAGCAGCTGAAGGCTATAATTTTGGTAACCCAATTGACCTGAGGACTCACTGGGCTAGACATGGTACCAACAAATTTGTCACTATCAGGTAG 480 0.4271 MRRLIELKKQCKRKEFNQXXXXASTTPKAKKPRKPKENSNAPVQRSKPMKTIEFVINGMDMDISSLPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSTYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFGNPIDLRTHWARHGTNKFVTIR 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211520g00001 159 Pfam GAGA binding protein-like family 10 159 IPR010409 -
Stsc211520g00001 159 SMART GAGA_bind_2 1 159 IPR010409 -
Stsc211520g00001 159 PANTHER - 9 159 IPR010409 -
Stsc211520g00001 159 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211520g00001 Stsc-Chr211520 1709 3748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211520g00001 25 159 BBR or BPC Transcription factor family AT2G01930 74.825 2.79e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Stsc211520g00001 GAGA_bind 4.1e-78 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211520g00001 - - gmx:100791533 261.536