Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211519g00012 ATGGGTCGTGGAAGAATACCAATGGAGCTGATCCAGAAGGAAAAAGATAGGAAGACAACATTCCTAAAGAGAAAGAATGGACTAATGAAGAAAGTGTATGAGTTCTCCACTCTTTGCAACGTTGATGTTTGTGTAATTATCTATGGCCCCAACTTTGACGGTCAAAGATTCACCGAACCTGAGACATGGCCCCAAGATTCCAAGGAGGTAAGAAGAATCATTCAAAAGTATCGTGACACAACAAGTGATAGACGTGCTAGGATCTATGATGTTCAAGAGTATTACAAAGATAGGGTTAAGAAAGTTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGCTTAAGATCATGTACCCCACTTGGGATGACTCATTCAATGATCTTAGTGAGGACCAATTGAGGGTTTTTCTTAGCATTTTGGATTCTAAGATTGTTTCTTGCAATCAAAGAATCAACATGCTAAATCAAAAGGGAAAAACAATAATGGGGGTAGATTCATCATCAAAAGACAATAATGTTAATGGTGGTGATCTTGTTGTTGCTACTAATACTACTACTACTCCATACTTGTCTTTATTATCAAACCCTAGTAGCCACCTTAATTTCATGCCAAACATGTCTACTCAAGCACAATTTTTTCCTCACCTTAATCCCATGATGACACCCTTTATTGGTGATACCAGCCAATTACCATTCTACCCTTTGCAACTAGGGCAAAGTTCATCACAATTTGACCAAAATGGTATGCAATTTATGGGGAAAAATAATGGTATGGTGGATTATTGGGAGCAACAACAAGTTGGTACCTTTGGCAATCATGATATAAAGTTTGATTTACTAAAAGAGAATGGAGATGGAAGCAATCAGAACTCTTCATCATCATGCTATTACAAAGGGAATATATCATTATCATCATCATCAATGCAGCCATATAATAGTTTTATTGCTCTACCACAATATCAAGATGTTCCTCCTGATGAGTTTCAAGTTAATGGAATCTGTGATGCAAATATGTTTGATCAAGTTCAAATGTTCAACTACATGCATGGAAGGAAGTAG 1059 0.3702 MGRGRIPMELIQKEKDRKTTFLKRKNGLMKKVYEFSTLCNVDVCVIIYGPNFDGQRFTEPETWPQDSKEVRRIIQKYRDTTSDRRARIYDVQEYYKDRVKKVEGEISKVHKEKLKIMYPTWDDSFNDLSEDQLRVFLSILDSKIVSCNQRINMLNQKGKTIMGVDSSSKDNNVNGGDLVVATNTTTTPYLSLLSNPSSHLNFMPNMSTQAQFFPHLNPMMTPFIGDTSQLPFYPLQLGQSSSQFDQNGMQFMGKNNGMVDYWEQQQVGTFGNHDIKFDLLKENGDGSNQNSSSSCYYKGNISLSSSSMQPYNSFIALPQYQDVPPDEFQVNGICDANMFDQVQMFNYMHGRK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211519g00012 352 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc211519g00012 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Stsc211519g00012 352 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc211519g00012 352 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc211519g00012 352 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc211519g00012 352 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc211519g00012 352 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Stsc211519g00012 352 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc211519g00012 352 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Stsc211519g00012 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211519g00012 Stsc-Chr211519 115157 116215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211519g00012 1 150 Type I MADS-box Gene Family AT5G55690 42.384 1.12e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211519g00012 SRF-TF 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211519g00012 - - aip:107640879 402.519