Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211519g00001 ATGGCTTCCAAATTATGTGACTCGTGCAAGTCCGCCACCGCTACCGTCTACTGCCGCCCCGACGCCGCCTTCCTCTGCTCCCCCTGCGACTCCAAAGTCCACGCCGCTAACAAGCTCGCCTCCCGCCACCCTCGCGTCTCCCTCTGCGAGGTCTGCGAGCAGGCGCCTGCTCACGTCACCTGCAAGGCCGACGCTGCTTCCCTCTGCCTCGCCTGCGACCGCGATATCCACTCCGCCAACCCTCTCGCTTCCCGCCACGAGCGAATCCCCGTCACACCGTTCTACCACTCGCTCGCCGCTACCGTCAAGTCTCCGGTCAACTTCCTCGATGACCACCGGTTCTTCTCCGACGCCGATGCTGATGCCGATGCTGACGTCAGCACTGAGGAGGCCGAGGCTGCTTCCTGGCTCCTTCCTACGCCTTCTAACCCTTCCAAGGCAGATCTGAACTCGTCTCAGTACATGTTCCAGGAGATGGAACAGGTTCCGTATGTAGATCTGGATTACGGTAACGTGGATCCGAAATCGGAGCAGAAAAGCTCCGCCACCACCGACGGTGTTGTTCCGGTGCAGAGCAAGACCGCCAACGAGCACTACTTTGAGCCTTTCCCCTACGGCGGCTACAAGTACAACTCGCAGTCTCAGTCACAGTCACAGATGAGCCATAGCGTGTCATCGTCGTCGATGGAGGTTGGTGTGGTGCCGGACGGGAACGCGATGTCTGAGATATCGAACTGCAAGGTAGCGACGGCGGTGGAGGGAGGTAACCAGGCAGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTATAGGGAGAAGAGGAAGAATCGAAAGTTCGAGAAGACTATTCGGTACGCTTCTCGTAAAGCTTATGCAGAAACGAGGCCAAGGATCAAAGGAAGATTCGCCAAGCGCACTGAGGTTGACCCTCTCAACGGATACGGCGTCGTTCCGTCGTGTTAA 984 0.5854 MASKLCDSCKSATATVYCRPDAAFLCSPCDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAASLCLACDRDIHSANPLASRHERIPVTPFYHSLAATVKSPVNFLDDHRFFSDADADADADVSTEEAEAASWLLPTPSNPSKADLNSSQYMFQEMEQVPYVDLDYGNVDPKSEQKSSATTDGVVPVQSKTANEHYFEPFPYGGYKYNSQSQSQSQMSHSVSSSSMEVGVVPDGNAMSEISNCKVATAVEGGNQAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVDPLNGYGVVPSC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211519g00001 327 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Stsc211519g00001 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 314 IPR045281 GO:0009909
Stsc211519g00001 327 Pfam CCT motif 270 312 IPR010402 GO:0005515
Stsc211519g00001 327 CDD Bbox1_BBX-like 5 48 - -
Stsc211519g00001 327 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Stsc211519g00001 327 SMART bboxneu5 49 91 IPR000315 GO:0008270
Stsc211519g00001 327 SMART bboxneu5 1 48 IPR000315 GO:0008270
Stsc211519g00001 327 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Stsc211519g00001 327 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Stsc211519g00001 327 CDD Bbox1_BBX-like 48 91 - -
Stsc211519g00001 327 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211519g00001 Stsc-Chr211519 31490 33044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211519g00001 1 326 C2C2-CO-like Transcription Factor Family AT5G24930 56.831 6.19e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc211519g00001 zf-B_box 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211519g00001 - - gmx:100794431 477.248