Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211518g00015 ATGGCAGAAAAACCAGCTTATTCTCTTTCATCATTTCTCTTTGCAACTTCTCTTCTTCTAACCCTAATTTCTTCTTCTTTGGCATCACCAACACTATCACTCTATGGCACACTCCTTCATTGCCTCTCACACGGCCCAAACTCATCAACACCTGCCTCCAACATAGTCTTTGATAGAACCAACGCTTCTTTCCCCACACTTCTCGAAAACTACATCCGCAATGCCAGGTGGAACACAAGCACAACACCAAAGCCATTGATCATCATCACACCCCTTCAAGAATCCCAAGTTCAAGCAGCAGTTATCTGCGCCAAGACCATTGGGATCCAAATCAGGATCCGAAGCGGCGGCCATGATTACGAAGGCCTTTCCTATGTCTCCAAACAACCCTTCATCGTTCTTGACATGTTCAATCTCCGGCAAATAACTGTTGACATAGCAAAACAAGTTGCCACAGTTCAAGCAGGAGCAACTCTCGGCGAACTTCACTATAATATATGGAAGAACAGCAAAATCCACGGCTTTCCCGCCGGACTGTGCACTACTCTTGGTGTTGGTGGCCACATAAGCGGCGGAGGCTACGGTGCCTTGCTGAGAAAATACGGTTTATCCGTTGATAATGTAATCGATGCGAAAATCGTAGATGTTAAGGGAAGAATACTTGATAGAAAGTCAATGAGGGAGGATCTTTTTTGGGCTATTAGAGGCGGCGGCGGAGCCAGCTTTGGTGTAGTTTTATCCTACACGGTTAAGTTAGTTTCGGTACCTGAAACTGTAACCGTTTTTCAAGTGGCAAGGACTCTGGAAGAGAATGCAATTGATCTTACCGTTCAGTGGCAACAAGTTGCTCCAACCATTGATGAAAGGTTTTTCATGAGGCTTAGCTTGTCGCCTTCGGGTTCTGAGGAGAACAAAACGGTTACAGCCAGTGTGGTGGCGTTTTTTCTCGGTGGCGTTGATGAGGCTGTTTCGATATTGAGGAAGGAGTTCCCGATTCTTGGAATCGGGAAAGAGAATTGCACCGAGATGAGATGGATTGAAGCTGTGATTTGGTTGAATAAGCCTGATGATTACAAGATCGGTGTTATGCCGGGGATAGTGTTGAATCGGCATCTCAATTCAGCTGCCTTCGGCTTCCTCAAGAGAAAATCTGATTATGTTCAGGTTCCGATCTCGAAAGAGGGGCTGGAGGGGATATCAAAAAAGATTTTGGCGGGAAAGGTAGCTCTCGTGTTCAATCCTTATGGCGGGAAGATGGCTGAGATTCTGGCAAACGCCACGGCTTTCCCTCATCGTGCCGGGAACTTGTTCAAGATTCAGTATTTTGTGAATTGGGATGATCCATCGCCTGCAGCGGCTCGGAAATTTGTTAATGAGGCGAGGAGTTTGTACAGTTACATGACTCCATTTGTGTCAAAGAATCCAAGAAGCGCGTTCTTGAATTATAGAGACATTGACATTGGAATCAATACGTTTGGTAAGGATAGTTATGAACAAGGGAAGGTTTATGGGGTTAAATACTTCAATGGCAACTTTGAGAGGCTCGTGAAGATTAAACTGCGGTTGATCCTGACAACTTTTTCAGGAATGAGCAGAGTATTCCCATTCTTCCAAGCTACTATTATTAATCCAACCATAGCAAAACCTGGTTGTGTTTCCACATGTGGGAACATTGACATCGCTTACCCTTTTGGGATGAACGATCCCAATTGCTATGCTCACAAATTTTTCCAGATAGAGTGCAAAAATAACAAGCCTTATCTTGCATCTTTCAATCTTGAAGTGACACAAATTTATGAAAATATTAGCGCGGTGGAGATCAAGAACCCAATCTACTATAGCTGCCAAAGCAAAAACGCTATCATAGACCTAAGAGGAAGCCCTTACGTGTATTCCCAAGAATATGACAAATTCATGGCCATTGGCTGCAACAAACTAGGGTTCTTGCGTTCCAACGGGTCAACGGTTGGTGGTTGCGTGTCCATCTGCGACGACGATGAAGCAGTAGGCGAGGTTGAATTCGAAAACGACGGTTGTCATGGGAGATACTGCTGTGAGACTTCACTGCCAATGCATGTTTGGGAGTACAACGCAACAATAAGGGATCTTGGAGATGGTGGAAGTGGGAGCAACATGTGTAGCTATGCGATGGTTGTGAGTGATGCTTGGATTCAGAGTTATGGTTTGGGGATTCAGAAGCTTAGTAACGTAGAGAACATGAATGGTGTTCCTGCGGTTCTTGAGTGGGAGATTCGCTATGATTTGGGGATCAATTCAACCTTCTCTTCTTCCCATGCTCGTTGTAACGTTTCCAGTCTTACGTCTCCAACCAACAATACCTCGGGTTTTAGGTGTCGATGCTTCGATGGCTACGATGGCAATCCTTATATTGAAGGTGGTTGTAAAGCTGTGGCATCCGGTAAAGAAAATGGATCCAAGTGGGCTATAATAGGAGTTTCATCAAGTCTTGGGTCAGTCATTTTACTCCTTGGTGGATGGTTGTTGTACAAACTTATAAGGAAGAGAATAATAAAGAAACGCAAGCAAAACTTCTTCAAGAAAAATGGCGGTTTGTTGTTAAAACAAAAATTATCTTCATCAGGCGAAGAAAATCTTGACAAAGTTGTTCTCTTCACCTTAAACGAGTTAGAAAGTGCCACTGATAACTTCAACCTAAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACCGTTTACAAAGGCATGCTAGTAGATGGCAAAATCGTTGCAGTGAAAAAGTTCAAAGTCCAAGGAAACACCGCAGAATTCATCAATGAATTTCTTGTTCTTTCTCAAATTAACCATAGAAATGTGGTTAAGTTGTTGGGGTGTTGTTTGGAGGCTGAAGTTCCTTTGCTCGTTTATGAATTCATTCCCAGTGGCAACCTTTTCGAATATCTTCATGAACAAAATGATCAAGATTTACCAATGACATGGGATATGAGATTGAGAATTGCAAGTGAGATTGCAGGGGCATTGTTTTACTTACACTCAATTGCTTCTCAACCAATTTATCATAGGGATATCAAATCAACAAATATACTATTGGATGAAAAGTACAGAGCAAAAGTAGCAGATTTTGGAACTTCTAGAATAGTTTCTGCTGAAGCTACTCATCTCACTACGGTAGTTCAAGGTACTTTTGGATATTTAGATCCTGAATATTTTCAAACTAGTCAGTTTACTGATAAGAGCGATGTGTATAGTTTCGGAGTGGTGCTTGTTGAACTTTTAACCGGACAAAAGGCGATATCGCCGGCTATAAGATCCGATGAAGTGAGGGGCTTAGCTTCGCTTTTTGTTGTGTGTATGGAGGAGAATAGGCTATTTGAGATTGTTGACAGAAGAGTGATGAAGGAGGGAGAGAAAGAACATATTATTGCAGTGGCTAATCTTGCATATAGGTGTTTAGAGATGAATGGGAGAAGACGGCCTACTATGAAAGAAGTTACCTTGGAATTGGAAGGGATTAGAAGATTGGATTATTGGAAGAGTGGTGATCCGGCACAAGAAAACTATGAAGAAATTGAGATTGATAGGAATGAAGATAACCAACTGTGGGATAGATATTCTAATGTGTCAGAAACATTGCATACCACTACAACTACTACAAGTAGCAGCAGAGAACTCTCTGAGGTTATGCCTATTCTTAGAATCAAATAA 3681 0.4249 MAEKPAYSLSSFLFATSLLLTLISSSLASPTLSLYGTLLHCLSHGPNSSTPASNIVFDRTNASFPTLLENYIRNARWNTSTTPKPLIIITPLQESQVQAAVICAKTIGIQIRIRSGGHDYEGLSYVSKQPFIVLDMFNLRQITVDIAKQVATVQAGATLGELHYNIWKNSKIHGFPAGLCTTLGVGGHISGGGYGALLRKYGLSVDNVIDAKIVDVKGRILDRKSMREDLFWAIRGGGGASFGVVLSYTVKLVSVPETVTVFQVARTLEENAIDLTVQWQQVAPTIDERFFMRLSLSPSGSEENKTVTASVVAFFLGGVDEAVSILRKEFPILGIGKENCTEMRWIEAVIWLNKPDDYKIGVMPGIVLNRHLNSAAFGFLKRKSDYVQVPISKEGLEGISKKILAGKVALVFNPYGGKMAEILANATAFPHRAGNLFKIQYFVNWDDPSPAAARKFVNEARSLYSYMTPFVSKNPRSAFLNYRDIDIGINTFGKDSYEQGKVYGVKYFNGNFERLVKIKLRLILTTFSGMSRVFPFFQATIINPTIAKPGCVSTCGNIDIAYPFGMNDPNCYAHKFFQIECKNNKPYLASFNLEVTQIYENISAVEIKNPIYYSCQSKNAIIDLRGSPYVYSQEYDKFMAIGCNKLGFLRSNGSTVGGCVSICDDDEAVGEVEFENDGCHGRYCCETSLPMHVWEYNATIRDLGDGGSGSNMCSYAMVVSDAWIQSYGLGIQKLSNVENMNGVPAVLEWEIRYDLGINSTFSSSHARCNVSSLTSPTNNTSGFRCRCFDGYDGNPYIEGGCKAVASGKENGSKWAIIGVSSSLGSVILLLGGWLLYKLIRKRIIKKRKQNFFKKNGGLLLKQKLSSSGEENLDKVVLFTLNELESATDNFNLNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVQGNTAEFINEFLVLSQINHRNVVKLLGCCLEAEVPLLVYEFIPSGNLFEYLHEQNDQDLPMTWDMRLRIASEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKVADFGTSRIVSAEATHLTTVVQGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELLTGQKAISPAIRSDEVRGLASLFVVCMEENRLFEIVDRRVMKEGEKEHIIAVANLAYRCLEMNGRRRPTMKEVTLELEGIRRLDYWKSGDPAQENYEEIEIDRNEDNQLWDRYSNVSETLHTTTTTTSSSRELSEVMPILRIK 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211518g00015 1226 Gene3D - 144 520 IPR016169 -
Stsc211518g00015 1226 SUPERFAMILY FAD-binding/transporter-associated domain-like 70 256 IPR036318 GO:0050660
Stsc211518g00015 1226 SMART serkin_6 890 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211518g00015 1226 FunFam Berberine bridge enzyme-like 15 33 139 - -
Stsc211518g00015 1226 FunFam Wall-associated receptor kinase-like 10 908 963 - -
Stsc211518g00015 1226 PANTHER OS08G0158400 PROTEIN 35 523 - -
Stsc211518g00015 1226 Gene3D Transferase(Phosphotransferase) domain 1 964 1184 - -
Stsc211518g00015 1226 ProSiteProfiles PCMH-type FAD-binding domain profile. 81 255 IPR016166 GO:0071949
Stsc211518g00015 1226 FunFam Wall-associated receptor kinase 2 964 1183 - -
Stsc211518g00015 1226 Pfam Protein tyrosine and serine/threonine kinase 891 1159 IPR001245 GO:0004672|GO:0006468
Stsc211518g00015 1226 Gene3D - 258 474 - -
Stsc211518g00015 1226 SUPERFAMILY Protein kinase-like (PK-like) 873 1160 IPR011009 -
Stsc211518g00015 1226 ProSiteProfiles Protein kinase domain profile. 890 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211518g00015 1226 CDD STKc_IRAK 896 1163 - -
Stsc211518g00015 1226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1010 1022 IPR008271 GO:0004672|GO:0006468
Stsc211518g00015 1226 Pfam Wall-associated receptor kinase galacturonan-binding 551 601 IPR025287 GO:0030247
Stsc211518g00015 1226 Pfam Berberine and berberine like 478 520 IPR012951 GO:0016491|GO:0050660
Stsc211518g00015 1226 Gene3D Phosphorylase Kinase; domain 1 861 963 - -
Stsc211518g00015 1226 Gene3D - 35 139 IPR016167 -
Stsc211518g00015 1226 Pfam FAD binding domain 85 221 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211518g00015 Stsc-Chr211518 64079 72049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211518g00015 9 519 Miscellaneous Gene Families AT1G01980 55.192 3.58e-176 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc211518g00015 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211518g00015 - - gmx:100798794 782.326