Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211518g00011 ATGAATGATCCAAAATGCTATGCCGACAAATCCTTTGAAATCGAATGCAGAAAGCAGCAGAAACCTTACCTTAAGTACCTAAACCTTGAGGTCACAAACATAGATGCTTCGGATAGCCAGGTTGAGATCATGAACCCGATTTTCAGATGGAACTGCAAAGATGAGAAAGATTTAAAACCTTTCGTAAACCTCAGTGGAACACCATTTTCGTATTCCAACGTCGAAAACAAGTTCACGGCCATAGGTTGCAACAAGATCGCATTCTTGGTGTCTAATGGGTTAGAAGTGAGTGGGTGTGTGACCCTTTGCGACCAACACGACAATGAAGAGGTTAACAGCAACGTTGCTTATGGTTACGGACAAGGAAGCGATGGGTGCTTAGGCAGGTTCTGCTGTGAGACATCACTGCCTCTGTACCTTTCAGAATTCAACGTGACACTTGAAAGCATGAAGGATAGAAATTCAAGCGATGAATGTGTTCATGCGTTGATTGGGACAGAGTATTGGTACGAAGTTTATGATGGTGTTAATGGTATTGAGTATAGAAGCCTTGGTGATTTGAGGGGTTTGAACTATGTTCGAGCCATGCTTGATTTTGTGATTCTCAACAACACTGTGAATCTACCTTCGGATTCAAACTGCACCCGTGTTGTTGGTTATTCTTCTTCTTCTTCTGCTCGGAGGTGTGAGTGCTACTCAGACTTTTATGGCAACCCATATATTACTGGAGGTTGCATTGATTTTGATTCATCCAATAAGAACAGTCGAGCAAAGTGGGTTATAATAGGAGTATCTGCAAGCCTGGGATTCATCATTCTCCTTCTTGGTCTGTTGTTTTTGTACATTGTTGTAAGGAGAAGAATCATAAAGAAGCGCAAACAGAAATTCTTCAAACAAAATGGTGGTTTGTTGTTGCAGCAAAGATTATCCTCTGGAGAAGTCACTGTTGAACAAGCTAAAGTGTTTAGCTTAAGGGAGTTAGAGAAGGCCACTGACAACTTCAATGTTAACAGAGTTCTTGGAAAGGGAGGTCAAGGTACTGTCTACAAGGGCATGCTGGTAAATGGTGAAATTGTTGCTGTCAAGAAGTTTAAGGTCCAAGGAAAGGTTGAAGAATTCATCAACGAATTCGTCATCCTTTCTCAGATTAACCATAGAAATGTGGTGAAGCTCTTAGGGTGCTGTTTGGAGACAGAAATTCCTCTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTATGAATATTTGCATGATCAAAACGAGGACTTACCAATGACTTGGGACATGCGTTTAAGGATTTCGATCGAAGTTGCAGGAGCTTTGTTTTACTTACACTCAATTGCATATCAGCCAATTTATCATAGAGATGTGAAATCAACAAACATACTTCTAGATGGAAAGTATAGAGCAAAATTGGCAGACTTTGGTGCATCTAGATTAATTTCCACAGAAGCTACTCATCTCACTACAGTAGTTCAAGGTACTTTTGGATATTTAGATCCTGAATATTTTCATACTAGTCAGTTTACAGAAAAGAGTGATGTTTATAGTTTCGGAGTTGTTCTTGTTGAACTCTTGACCGGTCAGAAACCGATATCATCCATGAGAGAGGAGGAGGATGCCAAGAGTTTGGCATCTTATTTTGTTGTTACTATGGAACGAGAGTGTTTGTTTGAGATTGTTGACAAGAGAGTCATGAAAGAAGGGGAGCAAGAACAGATCATTGGGGTTGCTAATCTTGCATATAGATGCTTGGAGTTGAATGGGAGAAAAAGGCCTACTATGAAGGAAGTGACATTTGAGTTAGAAAGGATTCGGAATTTGGATAGAAAGGTTGGTGGTAGCGGTGAGGTTGATTTACGAGGACAACACCGCCATGAAGAGATTGAGTTCGTTGGAACTGAAATGCCATGGACAGGAGATTCTGAATTTGATACATTGACAATGACAAACATAGAGAACAATACAAGCTCCTCGGAAATTAGGCCTATCCATGCAAAATATAATTGA 2013 0.4014 MNDPKCYADKSFEIECRKQQKPYLKYLNLEVTNIDASDSQVEIMNPIFRWNCKDEKDLKPFVNLSGTPFSYSNVENKFTAIGCNKIAFLVSNGLEVSGCVTLCDQHDNEEVNSNVAYGYGQGSDGCLGRFCCETSLPLYLSEFNVTLESMKDRNSSDECVHALIGTEYWYEVYDGVNGIEYRSLGDLRGLNYVRAMLDFVILNNTVNLPSDSNCTRVVGYSSSSSARRCECYSDFYGNPYITGGCIDFDSSNKNSRAKWVIIGVSASLGFIILLLGLLFLYIVVRRRIIKKRKQKFFKQNGGLLLQQRLSSGEVTVEQAKVFSLRELEKATDNFNVNRVLGKGGQGTVYKGMLVNGEIVAVKKFKVQGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLHDQNEDLPMTWDMRLRISIEVAGALFYLHSIAYQPIYHRDVKSTNILLDGKYRAKLADFGASRLISTEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGQKPISSMREEEDAKSLASYFVVTMERECLFEIVDKRVMKEGEQEQIIGVANLAYRCLELNGRKRPTMKEVTFELERIRNLDRKVGGSGEVDLRGQHRHEEIEFVGTEMPWTGDSEFDTLTMTNIENNTSSSEIRPIHAKYN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211518g00011 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Stsc211518g00011 670 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 64 618 IPR045274 GO:0007166
Stsc211518g00011 670 SUPERFAMILY Protein kinase-like (PK-like) 319 601 IPR011009 -
Stsc211518g00011 670 Gene3D Phosphorylase Kinase; domain 1 306 407 - -
Stsc211518g00011 670 Gene3D Transferase(Phosphotransferase) domain 1 408 618 - -
Stsc211518g00011 670 FunFam Wall-associated receptor kinase 2 304 407 - -
Stsc211518g00011 670 FunFam Wall-associated receptor kinase 2 408 623 - -
Stsc211518g00011 670 SMART serkin_6 334 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211518g00011 670 ProSiteProfiles Protein kinase domain profile. 334 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211518g00011 670 Pfam Protein tyrosine and serine/threonine kinase 336 600 IPR001245 GO:0004672|GO:0006468
Stsc211518g00011 670 CDD STKc_IRAK 340 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211518g00011 Stsc-Chr211518 45824 49413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211518g00011 6 629 Receptor kinase-like Gene Family AT1G16120 41.324 3.19e-164 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc211518g00011 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211518g00011 - - gmx:100798794 758.059