Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211518g00009 ATGGCATGTGCACAGAACGAAAGTAATACTCCTGTAGCACAATTTGGGTGCAATTCTACATGTGGAGATGTTCAAATCCCTTTCCCATTTGGAATGAACGAACTGGGATGCTATGCAGACCATTGGTTCCAAATAGAATGCAGAAACCATACACCATACCTGAAATCTATAGGGTTGGAGGTCTCATCAATTGATGCATCAGAAGGCACCATTGACATCATGCATCCGATTCACCGTTGGAACTGCAAAGTAGGACACAACGCTACCCAAGAATTCGTTGACCTGAGAGGAAGCCCGTTCGTGTATTCGCAAGTAAGCAACGTGTTCATTTCAGTTGGATGCAATGAAGTCTCTTTCTTGCTCTCCAACGGCACGCAAGTTAGCGGCTGCGTTTCGATCTGCGATGACAAGAACGAAGTGGAGAAGGAAATTGAAATCGACAATTGCAACGGAAAATACTGCTGTGTTACCTCCTTGCCTTTGTACCTCTCGGAATTCAACGTCACAACAGAGAGTTTAGGGAATAATAATGATGATTGCAGCTATGCGTTGATTGTGCAATACCATCGTGTTCCTGATTACATGCGTGGCTTAGGGATTAATTACCGGCGTAGTTGGAATTCGCTTACAGATCTCGGGGGTTTGAAGAACGTGGTGGTGGTGCTTGAATGGGAGATTCATAACTCATCTATAAGACTCCCTAGCTCAGGTGCTGGTTACTGCGTCAACACTAACATAACTTCTTCAAGGAATACTCATTCAGGTCGGAAATGTTACTGCGACACTGACCCTCATGGCAATCCCTACATCCAAGGAGGCTGCACCAACGATTATGGGTACGACGGCGGCCAGGGAAACAAAAACAGGTCAAAATGGGCTATAATAGGTGTTTTCTCGAGTCTTGGATCCATCATTTTACTTCTTGGTTCATGGCGGGTTTTTAAAGTGGTAAGAAGAAGAATAATAAAGAACCGAAAGGAAAAAAACTTCAAAAAGAATGGAGGTTTGCTGCTAGAAAAAAGGCTATCTTCAGGTGAAGTTAATGTTGACAAAGTCAAACACTTCAGCTTAAAGGAGTTAGAGAAGGCCACAGATAGCTTCAACATGAACAGAGTCCTAGGTAAGGGAGGACAAGGCACCGTCTATAAGGGTATGCTTATAGATGGAAAGATTGTTGCAGTCAAAAAGTTTAGAGTCCAAGGGAATGTTGAAGAATTCATTAACGAATTCGTCATCCTTTCGCAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGAAAGAAATTCCTCTGCTTGTTTATGAGTTCATCCCTAATGGAAATCTTTATGAATACTTGCATGACCAAAATGAGGACTTGCCAATGACATGGGATATGCGTTTGAGAATTGCAACTGAGATTGCAGGAGCACTTTTTTACTTACACTCTGCTGCTTCTCAACCAATTTATCATAGAGATGTGAAGTCAACAAATATTTTGTTGGATGAGAAGTATAGAGCAAAAGTAGCAGACTTTGGAGCTTCTAGAATGATCTCTATTGAAGACACTCATCTCACCACAGTCGTTCAAGGGACTTTTGGATATTTGGATCCTGAATACTTTCACACTAGCCAGTTGACAGAAAAGAGTGATGTTTACAGTTTTGGAGTAGTTCTTCTTGAACTACTGACAGGACAAAAGCCATTATCCTCTTTAAGACCCAACGAAGCGAAAAGTTTGGCTTCATATTTTGTTCTTTGCGTGGAGGAAGATCGTCTGTTTGACATAATCGACGATAGAGTGATAAAAGAAGGAGACAAAGAACACATCATTGCAGTTGCCAATCTTGCATATAGTTGCTTAGAGCTAAATGGGAAAAGAAGGCCAACTATGAAAGAAGTCACAAGAGAATTGGATGAGATCTGGAAACTGGAGAGGAAGTCTAATAATGCACAACAAAATCACCATGAAGAAATTGAGCATCCTGCAATTGAATATCAGCATCCATGGGTTGCAGATTCTGCTTCTGATATAAGTCCAAGCAACTTAACATTCACCTCAGAGTCAGAGATTATGCATATTCTTACCGAATAG 2085 0.412 MACAQNESNTPVAQFGCNSTCGDVQIPFPFGMNELGCYADHWFQIECRNHTPYLKSIGLEVSSIDASEGTIDIMHPIHRWNCKVGHNATQEFVDLRGSPFVYSQVSNVFISVGCNEVSFLLSNGTQVSGCVSICDDKNEVEKEIEIDNCNGKYCCVTSLPLYLSEFNVTTESLGNNNDDCSYALIVQYHRVPDYMRGLGINYRRSWNSLTDLGGLKNVVVVLEWEIHNSSIRLPSSGAGYCVNTNITSSRNTHSGRKCYCDTDPHGNPYIQGGCTNDYGYDGGQGNKNRSKWAIIGVFSSLGSIILLLGSWRVFKVVRRRIIKNRKEKNFKKNGGLLLEKRLSSGEVNVDKVKHFSLKELEKATDSFNMNRVLGKGGQGTVYKGMLIDGKIVAVKKFRVQGNVEEFINEFVILSQINHRNVVKLLGCCLEKEIPLLVYEFIPNGNLYEYLHDQNEDLPMTWDMRLRIATEIAGALFYLHSAASQPIYHRDVKSTNILLDEKYRAKVADFGASRMISIEDTHLTTVVQGTFGYLDPEYFHTSQLTEKSDVYSFGVVLLELLTGQKPLSSLRPNEAKSLASYFVLCVEEDRLFDIIDDRVIKEGDKEHIIAVANLAYSCLELNGKRRPTMKEVTRELDEIWKLERKSNNAQQNHHEEIEHPAIEYQHPWVADSASDISPSNLTFTSESEIMHILTE 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211518g00009 694 Pfam Wall-associated receptor kinase galacturonan-binding 17 73 IPR025287 GO:0030247
Stsc211518g00009 694 ProSiteProfiles Protein kinase domain profile. 367 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211518g00009 694 SMART serkin_6 367 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211518g00009 694 Gene3D Phosphorylase Kinase; domain 1 339 440 - -
Stsc211518g00009 694 Gene3D Transferase(Phosphotransferase) domain 1 441 663 - -
Stsc211518g00009 694 FunFam Wall-associated receptor kinase 2 337 440 - -
Stsc211518g00009 694 CDD STKc_IRAK 373 638 - -
Stsc211518g00009 694 FunFam Wall-associated receptor kinase 2 441 658 - -
Stsc211518g00009 694 Pfam Protein tyrosine and serine/threonine kinase 368 635 IPR001245 GO:0004672|GO:0006468
Stsc211518g00009 694 SUPERFAMILY Protein kinase-like (PK-like) 348 635 IPR011009 -
Stsc211518g00009 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Stsc211518g00009 694 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 646 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211518g00009 Stsc-Chr211518 36748 40927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211518g00009 8 687 Receptor kinase-like Gene Family AT1G16260 41.632 2.92e-172 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc211518g00009 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211518g00009 - - gmx:100798794 807.749