Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211518g00006 ATGAAGAAATCATCACAAGCCTCTGAAGCTAGTAATAAGGGTAAGGGTAAGGGTAAGTCCACAGCACCCAGAAGCACCACAACTCGAAGCCGAAAGCGCAAACATGTTGAAGAACAAGAAGAAGAACAAGTTGCTGATGCCGTAGTTGCCTCTTCTACACAAGGTAGTAACTCCTTCACTGCCCTCATTTCTGACAAGGATGTGCTTGACTGCCCCATTTGCTTTGATCCATGGACTATTCCAATCTATCAGAAGTGTCCCACATGCTCCTTGCAAATGGGTTCAATCCGTGTTAGAGCCTTGGAGAAAGTGTTGGAATCCATGAAAGTTCCATGCTCTCATGCAAAACATGGTTGCAATGCCACCTTCAGTTACACTTCCAAGTGTGCCCATGAATCCAACTGCATTTTTGTGCCTTGTCACTGTCCACACACGGATTGTGACTTTGTTTCCTCATTCTATGATCTGCCTCTCCACTTCATAAGTGAGCATGATTCTTCTGCAGCTGTGAGATTTTCCTATGATGAACCATTCACTGTCACACTCCAATCTGAAGAAGATGAAGCCATTGTACTTCAAGAAGAGGCTGATGACACATTGTTTGTACTCCACAATTTTGTGTTCAATCTTGGAAAGGCGGTGAATGTTTGCTGCATTCAGCCTGATTCATTGCCTAAATATGGGTTCCAAATTCTGGCAAAGTCCTCCATGGGAAGCAGTCTGGAGTGGAAGTCTTTAACTAAGAACATTCAAAGGTCCACTGTGGACACTACTTTTTCATCAGAGTTCCTAGTAGTTCCATCTGATTATTTTGGTGATGACCTGGAAATTTGCATACGTATGTAA 846 0.4326 MKKSSQASEASNKGKGKGKSTAPRSTTTRSRKRKHVEEQEEEQVADAVVASSTQGSNSFTALISDKDVLDCPICFDPWTIPIYQKCPTCSLQMGSIRVRALEKVLESMKVPCSHAKHGCNATFSYTSKCAHESNCIFVPCHCPHTDCDFVSSFYDLPLHFISEHDSSAAVRFSYDEPFTVTLQSEEDEAIVLQEEADDTLFVLHNFVFNLGKAVNVCCIQPDSLPKYGFQILAKSSMGSSLEWKSLTKNIQRSTVDTTFSSEFLVVPSDYFGDDLEICIRM 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211518g00006 281 Pfam Seven in absentia protein family 96 267 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc211518g00006 281 MobiDBLite consensus disorder prediction 1 49 - -
Stsc211518g00006 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 280 IPR044286 -
Stsc211518g00006 281 SUPERFAMILY TRAF domain-like 108 272 - -
Stsc211518g00006 281 MobiDBLite consensus disorder prediction 1 25 - -
Stsc211518g00006 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Stsc211518g00006 281 ProSiteProfiles Zinc finger SIAH-type profile. 107 165 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211518g00006 Stsc-Chr211518 21148 22076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211518g00006 67 276 C3H Transcription Factor Family AT2G41980 26.667 2.21e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211518g00006 K04506 - gmx:100797881 181.03