Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211518g00005 ATGAAGAAATCATCACCAGTCTCTGAAGCTACTAAGGGTAAGTCCACAGCACCAAGAACCACCACAACCCGAAGCCGAAAGCGGAAACATGTTGAACTACCACAACAACAAGAACAAGCTGCTGCTGCTGCCCCCTCTCCTACACAAGGTAGGTCCTTCACTTTCCTCCTTTCAGAGCCTGACGTGCTTGATTGCCCCATTTGCTTTGATCCACTTACCATTCCTGTCTATCAGTGTGAAAATGGTCACGTTGCTTGCTCTACTTGCTGCATCAGTCTTGAGGAGAAGTGTCCCTCATGCTGCTTGCCAATAGGTTCAATCCGTGTGAGAGTGTTGGAGAAAGTATTGGAATCCATTAAAGTTCAATGCTCTCATGCAAAATACGGTTGCAAAGTCACGTTGAGTTACAGTGACAAGTGTGTCCATGAATTCAACTGCCTTTTTATGCCGTGTCACTGTCCACACGCAGATTGCGACTTTGTTTCCTCATTCTATGATTTGCCTCTTCATTTCATAAGTGAACATGGTTCCTCTGCCGCTGTGAGGTTTTCCTATGATAAACCATTCGCTGTCACACTCCAATCTGAAGATGATCAAGCCATTGTACTCCAAGAAGAGACTGATGACACCTTGTTCGTACTCCACAATTTTGTGTTTAGTCTTGGAAATGCGGTTAATGTTTGCTGCATTCAGCCTGATTCATTGCCTAAATATCGGTTCGAAATTCTGGGAAAGTCCAAGGGAAGCAGTCTGGAGTGGAAGTCTTTTACTATGAACATTCAAAGTTCTAGTGTGGACACTACTCTTTCATCAAGGTTCCTGGTGATTCCATCTGATTATTTTGCTGACCTGGAAACTTGCATACATATGTAA 873 0.4387 MKKSSPVSEATKGKSTAPRTTTTRSRKRKHVELPQQQEQAAAAAPSPTQGRSFTFLLSEPDVLDCPICFDPLTIPVYQCENGHVACSTCCISLEEKCPSCCLPIGSIRVRVLEKVLESIKVQCSHAKYGCKVTLSYSDKCVHEFNCLFMPCHCPHADCDFVSSFYDLPLHFISEHGSSAAVRFSYDKPFAVTLQSEDDQAIVLQEETDDTLFVLHNFVFSLGNAVNVCCIQPDSLPKYRFEILGKSKGSSLEWKSFTMNIQSSSVDTTLSSRFLVIPSDYFADLETCIHM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211518g00005 290 CDD RING-HC_SIAHs 63 100 - -
Stsc211518g00005 290 SUPERFAMILY RING/U-box 61 107 - -
Stsc211518g00005 290 MobiDBLite consensus disorder prediction 1 47 - -
Stsc211518g00005 290 MobiDBLite consensus disorder prediction 1 20 - -
Stsc211518g00005 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 18 281 IPR044286 -
Stsc211518g00005 290 Pfam Seven in absentia protein family 107 278 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc211518g00005 290 SUPERFAMILY TRAF domain-like 118 281 - -
Stsc211518g00005 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 171 IPR013083 -
Stsc211518g00005 290 ProSiteProfiles Zinc finger RING-type profile. 65 100 IPR001841 -
Stsc211518g00005 290 ProSiteProfiles Zinc finger SIAH-type profile. 118 176 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211518g00005 Stsc-Chr211518 16701 17930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211518g00005 61 282 C3H Transcription Factor Family AT2G41980 26.923 1.01e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211518g00005 K04506 - gmx:100797881 239.195