Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc211516g00016 | ATGGCGATGATGATGAATAATCGAAGGTGCTCTGGGTGTAGCAAAACTGGTCACAATTCCAGAACATGTCCTTATTATTCCTCTACTTCTCGGACCACCGTTAATACTGTGAAGCTCTTCGGGGTGAGGTTGCCTACTATGACCGTCGGATCAGGATCATCAGCAGCGTCCTTATCATGCTCCGTCGCAACACCCAATCATCATAGCTCTCCTTCCTCCTTTGACGGTTATGTGTCGGATAATAATGAGCCATCAAACCCTGCCCCCAAAATCAACCGCCACCACCTTCCTCCTCCTATAAACAAAGGTATTCCATGGAACGAAGAAGAACATCGATTGTTCTTACTTGGCTTGGAGAAATTGGGAAAAGGAGATTGGCGTGGAATATCACGAAATTTCGTTCAGTCAAGAACTCCAACTCAAGTAGCAAGCCATGCTCAGAAGTACTTTCTCCGGCAACAGCAACGGCAGAGCAATGCGCCGCGGCGAAAACGACGGTCAAGCCTTTTTGACATGTTTCCAAATATGGCTTCAAATTCGGCTTCATTATTGAAAGAAGAACAAGTATCAGTGCCTTCATTATACCTCTCTCTCAATTCAGAATTTGAACAAACGGAAGCTACTTCAGAAGAAAATGTAGAGGAGCTCAATGAAACTATAATGGGATCCAGCGGAGGGACACCGGTGTCGCCACTGCCCGGATTGTTCCGGCCGCCATATCCAACTCTCCCATTTTCCTTATGGCCATCAAGTGCAAAATATTCCTTTGGAGAAGATACCTTAATTTTAGAGGGAAGGCCATTACATTAG | 810 | 0.4556 | MAMMMNNRRCSGCSKTGHNSRTCPYYSSTSRTTVNTVKLFGVRLPTMTVGSGSSAASLSCSVATPNHHSSPSSFDGYVSDNNEPSNPAPKINRHHLPPPINKGIPWNEEEHRLFLLGLEKLGKGDWRGISRNFVQSRTPTQVASHAQKYFLRQQQRQSNAPRRKRRSSLFDMFPNMASNSASLLKEEQVSVPSLYLSLNSEFEQTEATSEENVEELNETIMGSSGGTPVSPLPGLFRPPYPTLPFSLWPSSAKYSFGEDTLILEGRPLH | 269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc211516g00016 | 269 | ProSiteProfiles | Zinc finger CCHC-type profile. | 8 | 24 | IPR001878 | GO:0003676|GO:0008270 | |
| Stsc211516g00016 | 269 | Gene3D | - | 104 | 155 | - | - | |
| Stsc211516g00016 | 269 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 5 | 214 | - | - | |
| Stsc211516g00016 | 269 | CDD | SANT | 105 | 150 | IPR001005 | - | |
| Stsc211516g00016 | 269 | FunFam | transcription factor MYB1R1 | 104 | 155 | - | - | |
| Stsc211516g00016 | 269 | MobiDBLite | consensus disorder prediction | 69 | 88 | - | - | |
| Stsc211516g00016 | 269 | ProSiteProfiles | SANT domain profile. | 106 | 154 | IPR017884 | - | |
| Stsc211516g00016 | 269 | SMART | sant | 102 | 152 | IPR001005 | - | |
| Stsc211516g00016 | 269 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 105 | 154 | IPR017930 | - | |
| Stsc211516g00016 | 269 | Coils | Coil | 199 | 219 | - | - | |
| Stsc211516g00016 | 269 | ProSiteProfiles | Myb-like domain profile. | 105 | 150 | IPR001005 | - | |
| Stsc211516g00016 | 269 | Pfam | Myb-like DNA-binding domain | 105 | 150 | IPR001005 | - | |
| Stsc211516g00016 | 269 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 101 | 153 | IPR006447 | GO:0003677 | |
| Stsc211516g00016 | 269 | MobiDBLite | consensus disorder prediction | 69 | 98 | - | - | |
| Stsc211516g00016 | 269 | SUPERFAMILY | Retrovirus zinc finger-like domains | 5 | 30 | IPR036875 | GO:0003676|GO:0008270 | |
| Stsc211516g00016 | 269 | SUPERFAMILY | Homeodomain-like | 101 | 154 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc211516g00016 | Stsc-Chr211516 | 120530 | 122159 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Stsc211516g00016 | Myb_DNA-binding | 8.6e-10 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc211516g00016 | - | - | aip:107617323 | 337.806 |