Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211516g00012 ATGGTTCTTGTACGGATACCCCATTTGAGGTTCCTTCCCTTTCTGCTTCTGCTTCTTTACATTCACTGTATCAGCTGCTACAGCACAACCACCACACCATTGAACTGTACGGACACAGGCCGTGTCTGCACCTCTTTCTTGGCCTTTAAGCCTCAACAGAACCAAACCGTAGCTGTGATTCAAAGCATGTTTGATGTGTTACCCGGTGACATCACTGTTGAGGATAGTGGTTGGGATTATGTGTTCATAAGGAAGAACTGTTCTTGTGCCTCTGGCCTCAGAAAGTATGTGTCTAACACCACTTTTACTGTGAAGTCCAATAAAGGGTATGTGTATGATTTGGTTATGGATGCTTATGATGGTCTTGCTTTGCCTCCAAACACAACAAGGAGGGCTAAGAATGGTGCTGTTGTGTCTCTGAGGTTGTTCTGTGGCTGCTCTAGTGGGTTGTGGAACTATCTGATGAGTTATGTTATGAGAGATGGTGACAGTGTTGAATCATTGGCTAGTAGATTTGGGGTTAGTATGGATAGCATTGAGAGTGTGAATGGAATTGGTAATCCTGATAATGTCACTGTTGGTTCTCTTTATTATATCCCTCTTGATTCAGTTCCGGGCGATCCTTATCCCATTAACAATACTCCTCCTCCTGCTCCTGTTCCTGCCCCATCAGTTGAGAATATCTCAGGTGATCAAGTCAGTCATAAGGCTCATGTACCCTATGGATGGATCATTGGGGGTTCAGGGGTTGGTCTTTTTATGGTGTTATTTGGAATAGTTCTCTGTGTTTCTCTGAAATCATCGAATTGTCGCTCTGAAGCCAGAAGTAATGAGAAAGACGCCGAGGGAAAGATATCTCATAAATTCCATATTCTTAGAAACCCAAGTTTCTTCTGTGCTCTTGACCCTGATGTGTTTGACATGGATAAGCCTGTAGTATTTACATATGAAGAGATTTTCTCCACAACCGATTGTTTCTCTGATTCAAATCTACTTGGTCATGGAACCTATGGTTCGGTTTACTATAGCCTTCTTCGTGATCAGGAAGTTGCTATCAAAAGAATGACTGCTACAAAAACAAAAGAATTCATGTCGGAGATGAAAGTTCTATGCAAGGTCCATCATGCTAATCTGGTAGAATTGATCGGCTATGCAGCTACTCAGGATGAGCTTTTCCTTGTTTATGAGTATGCTCAAAAGGGTTCACTTAGAAGTCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCTTGGATTATGAGGGTCCAAATTGCTCTTGATGCCGCTCGGGGACTTGAATACATACATGAACACACTAAAACTCATTATGTCCACCGGGACATCAAGACGAGCAACATTTTGCTCGATGCTTCCTTTAGAGCAAAGATTTCAGATTTCGGGTTAGCAAAACTTGTTGGAAAAACAGATAATGGAGAAGTTTCAACAACCAAAGTTGTTGGTACATATGGATATCTTGCACCAGAATACTTGAGTGATGGCCTTGCAACAACGAAAAGTGATGTCTATGCATTTGGTGTCGTCCTTTTTGAGATCATATCGGGGAGGGAGGCCATTATTCGAACAGAAGGAACGATGTCCAAAAATCCAGATAGGCGTTCACTGGCATCTGTAATGTTGGCAGTTCTTAGGAACTCGCCGGATTCCATGAGCATGTCAAGCATGAGAGATTATATTGACCCAAATATGATGGATCTCTATCCTCATGATTGTGTATTTAAGATGGCCATGCTGGCGAAGCAATGTGTGGACGACGATCCGGTGTTACGTCCCGACATGAAACAAGTAGTGATATCTCTGTCACAGATTCTCCTTTCTTCAATTGAATGGGAAGCAACTCTTGCTGGAAATAGCCAAGTATTTAGTGGCCTTGTTCAGGGAAGATAG 1911 0.4244 MVLVRIPHLRFLPFLLLLLYIHCISCYSTTTTPLNCTDTGRVCTSFLAFKPQQNQTVAVIQSMFDVLPGDITVEDSGWDYVFIRKNCSCASGLRKYVSNTTFTVKSNKGYVYDLVMDAYDGLALPPNTTRRAKNGAVVSLRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDSIESVNGIGNPDNVTVGSLYYIPLDSVPGDPYPINNTPPPAPVPAPSVENISGDQVSHKAHVPYGWIIGGSGVGLFMVLFGIVLCVSLKSSNCRSEARSNEKDAEGKISHKFHILRNPSFFCALDPDVFDMDKPVVFTYEEIFSTTDCFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAATQDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTDNGEVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGREAIIRTEGTMSKNPDRRSLASVMLAVLRNSPDSMSMSSMRDYIDPNMMDLYPHDCVFKMAMLAKQCVDDDPVLRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211516g00012 636 Gene3D LysM domain 152 205 IPR036779 -
Stsc211516g00012 636 ProSiteProfiles LysM domain profile. 155 199 IPR018392 -
Stsc211516g00012 636 SMART serkin_6 326 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211516g00012 636 Pfam Protein tyrosine and serine/threonine kinase 330 606 IPR001245 GO:0004672|GO:0006468
Stsc211516g00012 636 FunFam Kinase family protein 301 397 - -
Stsc211516g00012 636 ProSitePatterns Protein kinases ATP-binding region signature. 332 353 IPR017441 GO:0005524
Stsc211516g00012 636 Gene3D Phosphorylase Kinase; domain 1 301 397 - -
Stsc211516g00012 636 Pfam LysM domain 157 194 IPR018392 -
Stsc211516g00012 636 FunFam PTI1-like tyrosine-protein kinase 3 398 622 - -
Stsc211516g00012 636 SUPERFAMILY Protein kinase-like (PK-like) 308 608 IPR011009 -
Stsc211516g00012 636 SUPERFAMILY LysM domain 155 200 IPR036779 -
Stsc211516g00012 636 Gene3D Transferase(Phosphotransferase) domain 1 399 622 - -
Stsc211516g00012 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Stsc211516g00012 636 ProSiteProfiles Protein kinase domain profile. 326 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211516g00012 636 SMART LysM_2 156 200 IPR018392 -
Stsc211516g00012 636 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 630 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211516g00012 Stsc-Chr211516 83883 88321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211516g00012 33 636 Receptor kinase-like Gene Family AT1G51940 69.171 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc211516g00012 PK_Tyr_Ser-Thr 5.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211516g00012 - - gmx:100796989 1036.56