Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211516g00011 ATGATGGATGAAAGTAGAAGAAGAATGGGAGGAAGAAGAAGAAGCCACCACAAGTTTTCAGAGGAAAGGGAGCTAGAACTAAGACTTGGTCCACCTGGTGAAGAACAAGAACAACAAGAAGAACAAGAAGAAGATTGTTGGTCTCATCAACACAATGAAAACAAGGGAGAAAGAAACAGTGATGACTCAGATCAATCACCACTCTCTCTTGGTTACTTCTCAGCCCAGAGAATTTACAACTTCCAGCCTAAAGCTTCATCATTTCTTCAGAACATGTCAATGGTGGGAAAGGAATCAAAGGATGCAACATCATCACAACCATGTCGTTCTGAAGTGATGGAGTTTCATAATGGTGCAGTCTGTGCAGAGAAGAAACCATTATCATCACCTTCTTCTGCAAATACAGCTGCCCCCAACAACAGCTCTCAGAAAAGAAGTGCAGCTGGTCCAGTAGTGGGTTGGCCACCAATTCGTTCATTCAGGAAGAACAATGCAAGTGGAAGCACTTCTAAGCCTCCTCTTGGGTCCCACCACCACAACCAGCAGCAGCATCATCATCATCATCTTAATCTTAATAATGTTGAAGACAAGGTTGCTAATACTACTAATAAGGAACTTGTTAACAACATTAGTGGTACTCCTAATAAAGGCATGTTTATAAAAATCAATATGGATGGAATCCCAATTGGGAGAAAAGTGGATATCAATGCTTATGACAGCTATGACAAACTTTCCTCTGTTGTTGACCACCTCTTTAGAGACCTCCTTTCAGCTCAAAGAAGAAATTCGTGTGGTGCTGGAACAGTTCAAAAGCAAAAGCAAGAAGAGGAAGAGAAAACAATGATATTAGATGGAAGTGGGGAATATACTCTTATTTATGAAGATAATGAAGGAGACAAGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGCGATTGCGAGTGTTGAAGAAATCTGATCTTGCAGCTCTTTCACTTGGTGGTAAGCAAGGTCACATAAACCACTGA 1023 0.4115 MMDESRRRMGGRRRSHHKFSEERELELRLGPPGEEQEQQEEQEEDCWSHQHNENKGERNSDDSDQSPLSLGYFSAQRIYNFQPKASSFLQNMSMVGKESKDATSSQPCRSEVMEFHNGAVCAEKKPLSSPSSANTAAPNNSSQKRSAAGPVVGWPPIRSFRKNNASGSTSKPPLGSHHHNQQQHHHHHLNLNNVEDKVANTTNKELVNNISGTPNKGMFIKINMDGIPIGRKVDINAYDSYDKLSSVVDHLFRDLLSAQRRNSCGAGTVQKQKQEEEEKTMILDGSGEYTLIYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKKSDLAALSLGGKQGHINH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211516g00011 340 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 327 IPR003311 GO:0005634|GO:0006355
Stsc211516g00011 340 MobiDBLite consensus disorder prediction 1 69 - -
Stsc211516g00011 340 SUPERFAMILY CAD & PB1 domains 212 320 - -
Stsc211516g00011 340 MobiDBLite consensus disorder prediction 43 62 - -
Stsc211516g00011 340 MobiDBLite consensus disorder prediction 124 187 - -
Stsc211516g00011 340 Gene3D - 212 334 - -
Stsc211516g00011 340 MobiDBLite consensus disorder prediction 127 147 - -
Stsc211516g00011 340 ProSiteProfiles PB1 domain profile. 217 323 IPR000270 GO:0005515
Stsc211516g00011 340 MobiDBLite consensus disorder prediction 161 177 - -
Stsc211516g00011 340 MobiDBLite consensus disorder prediction 1 35 - -
Stsc211516g00011 340 FunFam Auxin-responsive protein 212 334 - -
Stsc211516g00011 340 Pfam AUX/IAA family 24 329 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211516g00011 Stsc-Chr211516 73471 77558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211516g00011 221 334 B3 DNA Binding Superfamily AT4G23980 28.947 4.91e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc211516g00011 AUX_IAA 1.1e-68 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211516g00011 K14484 - tcc:18596026 242.276