Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211516g00005 ATGGGGAAAGCTACAAGATGGTTGAAGGGGCTATTAGGAATGAAGAAGGAGAATAAAGAGAATAACAATAAGAATCAACATCATCACATTGAAAATTCAGGGTCATTGCCAATGGCTTCTTCTTTTTCTTCTTCTTCCTATGACAAGAAAGAGAAGAAAAGATGGAGTTTTGCTAAGCAAGTAGGGAAGGATAATAACAATAATAATGGTTCCAATGGTGCTGCTTTGGATTCTAATTCTTCACCTTCTGCTGATGGTGCTTGGATTAGATCCTACATTGGTGACAATGAGAGTGAGCAGAACAAGCATGCAATTGCTGTGGCAGCTGCCACTGCCGCGGCTGCGGATGCCGCCGTGGCGGCTGCGCAGGCGGCGGTGGCAGTTGTGAGGCTGACAAGCCAAGGGAGAGGCTCATTGTTCTGTGGCAGCAGCAGAGACAAGTGGGCTGCTGTAAAAATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAGGCTCTTAGAGCACTGAAAGGGTTGGTTAAGATACAAGCTCTTGTTAGAGGTTTTCTAGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTATTCGAGCTCAGGCCGCCGTCCGGTCGCAGCGCGCTCGACGCTCCATGAGCAAAGACAATAGGTTCCTCCAGGAAGTTCTTGCAAGAAAATCTCTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGCAAAAGGATGATACCAACATCTTATGAAGCATCCTTCAATGGATTTGATGAGTCTCCAAAAATTGTTGAAATTGACACCTACAAAACTAGGTCAACACGGTCAAGGCGATACAGCACCACAATGTCCGAATGTGGCGAGGACCCTCCTCCTTACCATGCTATCTCATCCCCGCTTCCGTCCCCGGTCCCCGGCCGAATCTCGGTCCCGGATTGCCGCCACATTCAAGATTTCGATTGGTACTTCAACCCCGACGAATGTAGGTACTCGACGGCGCACAACACCCCTCGATTCGCAAACTACACGCACCCTAAAAACGCGCCGGCCACGCCGGCCAAGAGTGTTTGTGGAGGGGACACATACTTTAGACCTTATTCAAATTTCCCAAATTACATGTCAAATACTCAATCTTTTAATGCAAAGCTAAGGTCTCATAGTGCTCCAAAGCAAAGGCCANNNNNNNNNNGAGGCTTTCACTCAATGAAATGA 1212 0.4695 MGKATRWLKGLLGMKKENKENNNKNQHHHIENSGSLPMASSFSSSSYDKKEKKRWSFAKQVGKDNNNNNGSNGAALDSNSSPSADGAWIRSYIGDNESEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLFCGSSRDKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGFLVRKRAAATLHSMQALIRAQAAVRSQRARRSMSKDNRFLQEVLARKSLERFDETRSEFHSKRMIPTSYEASFNGFDESPKIVEIDTYKTRSTRSRRYSTTMSECGEDPPPYHAISSPLPSPVPGRISVPDCRHIQDFDWYFNPDECRYSTAHNTPRFANYTHPKNAPATPAKSVCGGDTYFRPYSNFPNYMSNTQSFNAKLRSHSAPKQRPXXXXGFHSMK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211516g00005 403 SMART iq_5 145 167 IPR000048 GO:0005515
Stsc211516g00005 403 SMART iq_5 168 189 IPR000048 GO:0005515
Stsc211516g00005 403 MobiDBLite consensus disorder prediction 10 27 - -
Stsc211516g00005 403 MobiDBLite consensus disorder prediction 282 301 - -
Stsc211516g00005 403 ProSiteProfiles IQ motif profile. 146 174 IPR000048 GO:0005515
Stsc211516g00005 403 MobiDBLite consensus disorder prediction 384 403 - -
Stsc211516g00005 403 ProSiteProfiles IQ motif profile. 170 197 IPR000048 GO:0005515
Stsc211516g00005 403 ProSiteProfiles IQ motif profile. 194 223 IPR000048 GO:0005515
Stsc211516g00005 403 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Stsc211516g00005 403 MobiDBLite consensus disorder prediction 60 82 - -
Stsc211516g00005 403 MobiDBLite consensus disorder prediction 28 45 - -
Stsc211516g00005 403 Gene3D - 87 172 - -
Stsc211516g00005 403 MobiDBLite consensus disorder prediction 7 82 - -
Stsc211516g00005 403 Pfam IQ calmodulin-binding motif 173 187 IPR000048 GO:0005515
Stsc211516g00005 403 Pfam IQ calmodulin-binding motif 148 167 IPR000048 GO:0005515
Stsc211516g00005 403 Pfam Protein of unknown function (DUF4005) 336 394 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211516g00005 Stsc-Chr211516 37057 41337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211516g00005 1 393 IQD Protein Family AT3G16490 49.132 6.22e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211516g00005 - - gmx:100797686 491.115