Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211515g00013 ATGGCGCCTTTTCTGCTGCATGGAAATATCGATGTAACCATTTATGAGGTTCAAAACGCCGAGGCCCTTTCATCGCGTCTTCCAAGTGCTGTAAGAGTAATAACGAGTAGAAGCATTTATCTGGATGAAGTAAAGATTGAAAGCAGGCGTTTTGATAACCCTAAATTAGAAGAGTCTTTTTACATTCGTTGTGCCCATAAGACATCAAATATCATATTCATCTTGGAATGTGATGCCAACTACTTGTTTTCTGGACGATTTGTTCTTGGACAAGCATATATAGCTGTTGATGAGAAAATCTTAAATGGTGATGAAGTAGACAAATGGGTTGACATAGTTGATGAGAGCAAAAACCCCATACATGGGGCTCCAAAGATCCATGTCAAGTTACAATTTTTTGATGCTAAACGGCACCCAAACTGGTCTCAAGGAATCAAAGCTCCTGATTTTCCTGGGGTTCCTCGCACTTTCTTCTCACAACATAAGGGATGCAAGGTTACACTTTACCAAGATGCTCATGTCGGAGATGATTTTTCCCCAAGAGTAGTGCTTGATGAAGGTGAGACTTACAAGCCTCAAAGATGCTGGGAGGATATATTTAATGCAATCAATGAAGCAAAACACTTTATATACATTGCTGGCTGGTCTGTTTACACTGAGATTTCTCTTGTAAGAGATCCAAAGAGGCCAAAGCATGGGGGAGACATAACACTTGGCCAGCTTCTCAAGAAAAAGGCAAAAGATGATGGAGTCAAGGTTGTGCTGCTTCTATGGCAAGATGGAATTCGAGTTCCAATGATTGGAAATCACATCAGCATCATGCATACTCATGATAAAGAAACCCAAAGCTATTTTAAGAACACTAATGTGCATTGCGTTTTATGTCCTCGTGACAGTATTTATTTCACTCATCATCAAAAGATGGTGGTGGTGGATGCTAAGTTGCCAAATGGAGATGAGTCAAATAAAAGAAGAATAGTGAGTTTCATTGGAGGTATTGATCTCTGTGATGGGAGATATGATGCTCCAACTCATTCACTCTTTAGAACCTTGAAGGATGAACACAATCAAGATTTCCATCAACCCTGCATAAATGGTGCTAGAATCGAAAAAGGCGGTCCTAGAGAGCCATGGCATGACGTGCATTGTAAGCTTGAAGGGCCAATTGCATGGGATGTTTATTCCACCTTTGTGGAGAGATTTAGGAAACAGGGCATAAAGGGCATGCTTCTTTCAGAGGAAAAGATAAAAGATTGCATCGTTTCACCATCTCAAGTAATAGACTCCAATGATGATGACACATGGAATGTTCAATTATTCAGATCCATTGATAACAATGCTACCCTTGGGTTTCGAGAATCTGGTGATGAAGATGTTTTTAAATTTGGGCTTGTGAAGGAGGAGAATAAGATGATAGATAGAAGCATTCAAGATGCATATATTCAAGCTATTAGGCGGGCGAAAAATTTCATCTATATTGAGAATCAATATTTCATAGGAAGCGATTTCGATTGGAGTGTTGATGAAAAAAAGGAAGAGCACCCTGATGCTGTGAATCTAATACCAAAGGAGCTTTCGCTTAAGATTGTTAGCAAGATCAAAGCCAGGGAAAGGTTTGTTGTGTATGTTGTTATTCCAATGTGGCCAGAGGGTGTCCCGGAGAGTGGAAGTGTTCAGAAAATATTATACTTCCAAAGGAGGACCATAGAGATGATGTACAAGGGCATTGTTCAAGCACTAAAGGAAGAAGGACTTAATGACGATCCTCAGCAATATTTGGCATTCTTCTGTCTTGGCAATCGAGAGGTGAAAAATTATGGAGAATATAAGCCTCCACAAAAACCAAATCAACGTTCCAATTATATGAAATCTCAGGAGGCTAGACGATTCATGATTTATGTGCATTCAAAGTTGATGATAGTTGATGACGAATACATAATAGTTGGATCTGCCAACATCAATCAGAGATCAATGGACGGAGGAAGAGACTCTGAAATTGCCATGGGAGCTTATCAACCGTACCATTTGGCTACCAACTATGGTGGTGCGAGAGGCCAAATCCACGGCTTCCGCATGTCCTTATGGTATGAGCACCTCGGCATACTTGACAACGCCTTCCTCAACCCTGAAAGCGAAGAATGTATCGTGAAAGTGAACCTACTTGCTAAAGAGTATTTTGATGAATATGATCGGGAGTCATCCATACAAGACCTTCCTGGGCACCTACTCCATTATCCTCTTGAAATTTCTGAAAAGGGAATTGTCATAAATATCAACAAGTTCTTTCCAGACACAAATGCTCATACTGTAGGCAATAAAGCCACTGATATAGTTACTTATATCATTCCTAATAAAAAATTATTCAAAAGGACTTGA 2376 0.399 MAPFLLHGNIDVTIYEVQNAEALSSRLPSAVRVITSRSIYLDEVKIESRRFDNPKLEESFYIRCAHKTSNIIFILECDANYLFSGRFVLGQAYIAVDEKILNGDEVDKWVDIVDESKNPIHGAPKIHVKLQFFDAKRHPNWSQGIKAPDFPGVPRTFFSQHKGCKVTLYQDAHVGDDFSPRVVLDEGETYKPQRCWEDIFNAINEAKHFIYIAGWSVYTEISLVRDPKRPKHGGDITLGQLLKKKAKDDGVKVVLLLWQDGIRVPMIGNHISIMHTHDKETQSYFKNTNVHCVLCPRDSIYFTHHQKMVVVDAKLPNGDESNKRRIVSFIGGIDLCDGRYDAPTHSLFRTLKDEHNQDFHQPCINGARIEKGGPREPWHDVHCKLEGPIAWDVYSTFVERFRKQGIKGMLLSEEKIKDCIVSPSQVIDSNDDDTWNVQLFRSIDNNATLGFRESGDEDVFKFGLVKEENKMIDRSIQDAYIQAIRRAKNFIYIENQYFIGSDFDWSVDEKKEEHPDAVNLIPKELSLKIVSKIKARERFVVYVVIPMWPEGVPESGSVQKILYFQRRTIEMMYKGIVQALKEEGLNDDPQQYLAFFCLGNREVKNYGEYKPPQKPNQRSNYMKSQEARRFMIYVHSKLMIVDDEYIIVGSANINQRSMDGGRDSEIAMGAYQPYHLATNYGGARGQIHGFRMSLWYEHLGILDNAFLNPESEECIVKVNLLAKEYFDEYDRESSIQDLPGHLLHYPLEISEKGIVININKFFPDTNAHTVGNKATDIVTYIIPNKKLFKRT 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211515g00013 791 Pfam Phospholipase D Active site motif 302 339 IPR001736 GO:0003824
Stsc211515g00013 791 PIRSF PLD_plant 1 782 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc211515g00013 791 Gene3D Endonuclease Chain A 428 674 - -
Stsc211515g00013 791 Pfam PLD-like domain 481 665 IPR025202 -
Stsc211515g00013 791 SMART pld_4 630 657 IPR001736 GO:0003824
Stsc211515g00013 791 SMART pld_4 300 339 IPR001736 GO:0003824
Stsc211515g00013 791 Gene3D Endonuclease Chain A 183 427 - -
Stsc211515g00013 791 SUPERFAMILY Phospholipase D/nuclease 474 715 - -
Stsc211515g00013 791 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 630 657 IPR001736 GO:0003824
Stsc211515g00013 791 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 300 339 IPR001736 GO:0003824
Stsc211515g00013 791 PANTHER PHOSPHOLIPASE D 5 772 IPR015679 -
Stsc211515g00013 791 Pfam Phospholipase D C terminal 703 772 IPR024632 -
Stsc211515g00013 791 SUPERFAMILY Phospholipase D/nuclease 136 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211515g00013 Stsc-Chr211515 57892 63407 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211515g00013 1 774 Phospholipase D Gene Family (Wang group) AT1G52570 57.160 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211515g00013 K01115 - gmx:100784434 934.865