Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211515g00010 ATGACATCAAATATTATATTCACCTTGGAACAAGATAACTACGTGTTTTCTGGAACAACTGTTCTTGGAAAAGCATATCTAGCTGTTGATGAGGAAATCTTAAATGCTGATCATGATGAAGGAGTAGACAAATGGGTTGACATAGTTGATGAGAGAAAAAATCCCATAGATGGGGCTCCAAAGATCCATGTCAAGCTATATTTTTTTGATGCTAAACGAGACGAAAACTGGTCTCAAGGAATCAAAGCTCCTGATTTTCCAGGAGTTCCTCGCACTTTCTTCTCACAACATAAGGGATGCAAGGTTACTCTTTACCAAGATGCTCATGTCCTAGATGATTTTTTTCCGAAAGTAGTGCTTGATGGAGGTGAGACTTACAAGCCTCAAAGATGCTGGGAGGACATATTTGATGCAATCAACGAAGCAAAACACTTCATATACATTGCTGGTTGGTCTCTTTACACTGAGATTTCTCTTATAAGAGATCCAAAAAGGCAAAAGCATGGGGGAGACATGACACTTGGCCAGCTTCTCAAGAAAAAGGCAAATGACGGAGTCAAGGTTGTGTTGCTTCTATGGCAGGATGGAATTCCATTATTATTTGGATATCGCATCACAATCATGGGAACTCATGATAAAGAAACCGAAAGCTATTTTAAGAACACTAATGTGCACTGCGTTTTATGCCCTCGTGACAGTGTTTTATTCACTCATCATCAAAAGATTCTCGTGGTAGACGCTAAGTTGCAAAATGGAGATGAGTCAAATAAAAGAAGAATAGTGAGTTTCATTGGAGGTATTGATCTTTGTGACGGAAGATATGATACTCAATCTCATTCTCTTTTTCAAACTTTAGCCATTGAACACAGTAAGGATTTTTATCAACCAAGCATTGATGGCTCTTCGATTGAAAAGGGTGGTCCTAGGGAGCCATGGCATGACGTGCATTGCAAGCTTGAAGGTCCTGTTGCATGGGATGTTTATTCCACCTTTGTGCAGAGATATAAAAAACAGGGCACAGATCAGAGCATGCTTCTTTCAGAAGAAAAGTTTAGAGATATCATCATTGCACCATCTCAAGCAACAAACCCTGATGATAATGAAACTTGGAACATTCAGTTATTCAGATCCATTGATAATGAAGCTACTCTTGGGTTTCCAAATACTGTTAAAAAAGCTTATGATGCTGGGCTTGTTATTAGTGGCGAGGAGAACAAGATGATAGATCGGAGCATTCAAGATGCATACATAAGTGCTATTCGCCGTGCTAAGAATTTCATCTACATTGAGAATCAGTACTTCATTGGAAGTGTTTTTGGTTGGAGTGCGGATAACAAAGAATTTGATGCTTGGAATCTAATCCCAAAGGAGCTTTCACTCAAAATTGTTAGCAAGATTAAAGCAAAGGAGAAGTTCATGGTGTATGTAGTGATTCCAATGTGGCCAGAGGGTCTTCCGAAAGATAAGACTGCCGGAACAGCTCAGAAGGTACTGTATTTGCAAAGGAGGACCATAGAGATGATGTATAAGGACATTGTTGAAGCACTCAAGGTAGAGAAAATTGAACAAGATCCTTATAAATATTTATCATTCTTCTGTCTTGGCAATCGAGAGGTGAAGAAGGATGCAAAATATGTGCCTCGAGAAACACCAACACAAGGTTCCCATTACCAAAGAGCCCAAGATGCTAGACGCTTCATGATTTATGTGCATTCCAAGATGATGATAGTTGATGATGAATACATAATTATTGGATCTGCCAATATCAACCAGAGATCAATGGATGGTGGTAGAGACTCTGAAATCGCGATGGGAGCTTATCAACCGCACCATTTGGCCACCAACCAGGGTGGCGCGAGGGGCCAGATCCATGGCTTTCGCATGTCCCTATGGTACGAGCACCTCGGCATTCATGATGACACCTTCCTCAACCCTGAAAGTAAAGAATGTATTAACAAAGTGAAGCACCTTGGTGAGAAGTATTGGAATTTGGATTCTAATAAAGATTCAGTTAACCTTCCTGGCCACTTGCTTCGGTATCCTATTGAAATTTCTGCTAATGGAAGTGTCACAAATCTCAAAGGATTTGAGTTCTTCCCAGACACTGATGATGCTCCTATTTTAGGCGAAAAAAGTCCTACTTTTATAAGTCCAGAGAGAGATCACCGTGCTAGATCCGCTGCTCCCTCAAGGAGCTGCGCCGCCGTCCAGTTGTCACTGCTCTCCCGTTCGTTCACCTTTGTCCGGTCGCCATTGTTCCTTAGCCTTCAACGCCGTCCTCTGCTCCACCTGAACCCTCGCCAATCTGCGATCTCCGTCGTCGTCCAACAGTTGGACGCGAGATCCCAGAGGTGGTCTCCTTCGATCTGCCTTCTACAACGCCTCTTTCTTTTAGCCTCGCCGCCGTCGTCTTCCGTGTCTACACCATCTTCAGCAGCGCTTCCTCTTCCAAGTCTAGTCGTCTTCATCCTGCTGCTGTTTTGCCGCAACCTCGGTTCCCTGCAACACGGCCCCTCCTGCCTCGATGCTACCGCTGCTCGTGACGGCTCAACCCAATCCCTCCGTTCAACATCTCATTCATCATCAGAGACATTGGTTTGA 2601 0.4298 MTSNIIFTLEQDNYVFSGTTVLGKAYLAVDEEILNADHDEGVDKWVDIVDERKNPIDGAPKIHVKLYFFDAKRDENWSQGIKAPDFPGVPRTFFSQHKGCKVTLYQDAHVLDDFFPKVVLDGGETYKPQRCWEDIFDAINEAKHFIYIAGWSLYTEISLIRDPKRQKHGGDMTLGQLLKKKANDGVKVVLLLWQDGIPLLFGYRITIMGTHDKETESYFKNTNVHCVLCPRDSVLFTHHQKILVVDAKLQNGDESNKRRIVSFIGGIDLCDGRYDTQSHSLFQTLAIEHSKDFYQPSIDGSSIEKGGPREPWHDVHCKLEGPVAWDVYSTFVQRYKKQGTDQSMLLSEEKFRDIIIAPSQATNPDDNETWNIQLFRSIDNEATLGFPNTVKKAYDAGLVISGEENKMIDRSIQDAYISAIRRAKNFIYIENQYFIGSVFGWSADNKEFDAWNLIPKELSLKIVSKIKAKEKFMVYVVIPMWPEGLPKDKTAGTAQKVLYLQRRTIEMMYKDIVEALKVEKIEQDPYKYLSFFCLGNREVKKDAKYVPRETPTQGSHYQRAQDARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAYQPHHLATNQGGARGQIHGFRMSLWYEHLGIHDDTFLNPESKECINKVKHLGEKYWNLDSNKDSVNLPGHLLRYPIEISANGSVTNLKGFEFFPDTDDAPILGEKSPTFISPERDHRARSAAPSRSCAAVQLSLLSRSFTFVRSPLFLSLQRRPLLHLNPRQSAISVVVQQLDARSQRWSPSICLLQRLFLLASPPSSSVSTPSSAALPLPSLVVFILLLFCRNLGSLQHGPSCLDATAARDGSTQSLRSTSHSSSETLV 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211515g00010 866 Gene3D Endonuclease Chain A 366 614 - -
Stsc211515g00010 866 SUPERFAMILY Phospholipase D/nuclease 72 337 - -
Stsc211515g00010 866 PANTHER PHOSPHOLIPASE D 3 710 IPR015679 -
Stsc211515g00010 866 Pfam Phospholipase D Active site motif 236 273 IPR001736 GO:0003824
Stsc211515g00010 866 Pfam Phospholipase D Active site motif 567 593 IPR001736 GO:0003824
Stsc211515g00010 866 Pfam Phospholipase D C terminal 639 710 IPR024632 -
Stsc211515g00010 866 SUPERFAMILY Phospholipase D/nuclease 412 651 - -
Stsc211515g00010 866 PIRSF PLD_plant 1 718 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc211515g00010 866 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 566 593 IPR001736 GO:0003824
Stsc211515g00010 866 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 234 273 IPR001736 GO:0003824
Stsc211515g00010 866 Gene3D Endonuclease Chain A 121 365 - -
Stsc211515g00010 866 SMART pld_4 566 593 IPR001736 GO:0003824
Stsc211515g00010 866 SMART pld_4 234 273 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211515g00010 Stsc-Chr211515 45337 50183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211515g00010 1 712 Phospholipase D Gene Family (Wang group) AT1G52570 60.274 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211515g00010 K01115 - jre:109013902 911.368