Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211515g00006 ATGACATCAAATATCATATTCATCTTGCAACGTGAGAACTACGTGTTAGCTGGAGGAACTGTTCTTGGACAAGCATATGTACCTGTTGATGACGAAATCTTAAATGGTGATGGAGTAGTAGACAAATGGGTTGACATAGTTGATGGGAGAAAAAAACCCATATATGGGGGTCCAAAGATCCATGTCAAGCTACAATTTTTTGATGCTAAACGCCATCCAAACTGGTCTCAAGGAATCAAAGCTCCTGATTTTCCAGGAGTTCCTCGCACTTTCTTCTCACAACAAAAGGGATGCAAGGTTACTCTTTACCAAGATGTTCATGTCCGAGATGATTTTTCACCAAGAGTAGTGCTTGATGGAGGTGAGACTTACAAACCTCAAAGATGCTGGGAGGATATATTTGATGCAATCAATAAAGCAAAACACTTTATATACATTGCTGGCTGGTCTCTTTACACTGACATTTCTCTCATAAGAGATCCAAAGAGGTCAAAGCATGGAGGAGGAGACATAACACTTGGCGAGCTTCTCAAGAAAAAAGCGAACGATGACGGAGTCAAGGTTGTGCTGCTTCTATGGCGGGATGGAATTCGAATTCCCATGGTTAACAGGTACATCAGAATTATGCATACTCATGATAAAGAAACCCAAAGATATTTTAAGAACTCTAATGTGCATTGCGTTTTATGCCCTCGTGACGGCCTTTATTACACTCATCATCAAAAGATGGTGGTGGTGGATGCTAAGTTGCCAAATCAAGAGTCACAAAAAAGAAGAATAGTGAGTTTCATCGGAGGTATTGATCTCTGTGATGGAAGATATGATACTCAATCTCACTCTCTTTTTCAAACCTTAGCCGCTGAACACAGTAAGGATTTTTATCAACCAAGCATTGATGGTTCTTCAATTGAAAAGGGTGGTCCTAGGGAGCCATGGCATGACGTGCATTGCAAGCTGGAAGGGCCAATCGCATGGGATGTTTATTCCACCTTTGTCCAGAGATCCATTGATAATGAAGCTACTCTTGGGTTTCCAGAAAGTTCTAAAGAAGCTTTTGATGTTGGGCTTGTTAGTAATAGTGAGGAGAAGAAGATGATAGATCGAAGCATTCAAGATGCATATATAAGTGCTATTCGTCGTGCTAAGAATTTCATCTACATTGAGAATCAGTACTTCATAGGAAGTGTTTTCGGTTGGAGTGCGGATAACACAGAATTTGATGCTTGGAATCTAATCCCAAAGGAGCTTTCACTCAAAATTGCTAGCAAGATTAAAGAAAAGGAGAAGTTCATGGTGTATGTAGTGATTCCAATGTGGCCGGAGGGTGTTCCGAAAGATAAGACTACCGGAACAGTTCAGAAGATACTAGAGGTGAAGAATGATGGAGAATATGTGCCTCCAAAAACACCAAAACAAGGTTCTCATTACCAAAAAGCCCAAGATGCTAGACGCTTCATGATTTATGTGCATTCTAAGATGATGATAGTTGATGATGAATACATAATTATTGGATCTGCCAACATCAACGAGAGATCAATGGATGGTGGAAGAGACTCTGAAATTGCGATGGGAGCTTATCAACCGCACCATTTGGCCACCAACCAGGGTGGTGCGAGGGGCCAAATCCATGGCTTTCGCATGTCCCTATGGTACGAGCACCTCGGCATGCATCAAGACACCTTCCTCAACCCTGAAAATGAAGAATGTATTAACAAAGTGAAGCAGCTTGCAGAGAAATATTGGGACTTGTATTCTAATAAAGATTCAGTTAACCTTCCTGGCCACTTGCTTCGGTATCCTATTGAAATTTCTGCTGATGGAAGCGTCACAAATCTCAAAGGATTTGAGTTCTTCCCAGACACTGATGATGCTCCAATTCTAGGTGAAAAAAATCCTACTATTATAAGTTCAGCTCTTCCCAACGAGATCTACACCTTTTAA 1941 0.4101 MTSNIIFILQRENYVLAGGTVLGQAYVPVDDEILNGDGVVDKWVDIVDGRKKPIYGGPKIHVKLQFFDAKRHPNWSQGIKAPDFPGVPRTFFSQQKGCKVTLYQDVHVRDDFSPRVVLDGGETYKPQRCWEDIFDAINKAKHFIYIAGWSLYTDISLIRDPKRSKHGGGDITLGELLKKKANDDGVKVVLLLWRDGIRIPMVNRYIRIMHTHDKETQRYFKNSNVHCVLCPRDGLYYTHHQKMVVVDAKLPNQESQKRRIVSFIGGIDLCDGRYDTQSHSLFQTLAAEHSKDFYQPSIDGSSIEKGGPREPWHDVHCKLEGPIAWDVYSTFVQRSIDNEATLGFPESSKEAFDVGLVSNSEEKKMIDRSIQDAYISAIRRAKNFIYIENQYFIGSVFGWSADNTEFDAWNLIPKELSLKIASKIKEKEKFMVYVVIPMWPEGVPKDKTTGTVQKILEVKNDGEYVPPKTPKQGSHYQKAQDARRFMIYVHSKMMIVDDEYIIIGSANINERSMDGGRDSEIAMGAYQPHHLATNQGGARGQIHGFRMSLWYEHLGMHQDTFLNPENEECINKVKQLAEKYWDLYSNKDSVNLPGHLLRYPIEISADGSVTNLKGFEFFPDTDDAPILGEKNPTIISSALPNEIYTF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211515g00006 646 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 235 273 IPR001736 GO:0003824
Stsc211515g00006 646 Gene3D Endonuclease Chain A 363 532 - -
Stsc211515g00006 646 Gene3D Endonuclease Chain A 119 349 - -
Stsc211515g00006 646 Pfam Phospholipase D C terminal 559 629 IPR024632 -
Stsc211515g00006 646 SUPERFAMILY Phospholipase D/nuclease 70 334 - -
Stsc211515g00006 646 PANTHER PHOSPHOLIPASE D 7 334 IPR015679 -
Stsc211515g00006 646 Pfam Phospholipase D Active site motif 486 512 IPR001736 GO:0003824
Stsc211515g00006 646 Pfam Phospholipase D Active site motif 237 273 IPR001736 GO:0003824
Stsc211515g00006 646 SUPERFAMILY Phospholipase D/nuclease 368 569 - -
Stsc211515g00006 646 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 485 512 IPR001736 GO:0003824
Stsc211515g00006 646 SMART pld_4 235 273 IPR001736 GO:0003824
Stsc211515g00006 646 SMART pld_4 485 512 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211515g00006 Stsc-Chr211515 25355 30052 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211515g00006 1 637 Phospholipase D Gene Family (Wang group) AT1G52570 53.388 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211515g00006 K01115 - gmx:100784434 771.926