Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211513g00011 ATGAGAAGACATGGCATGAGATGGGAAGAGGGTTTCGAGAGAGAGAAACATGGTGAGTTTGCATCTGGAGTTTGGAGGTTCAACTCAGGGTTAGGGGTACGTGACTGGAGATGGAAACAACAGACGTTCATGTCGAAGGAAATTCATACGGTGTTAGTGGACCACTTGCCATCGGGGGTGTCGGAGCGAGAGCTCTATAAGGAGTTTGGGAAAGATGGATATATATCAGACATTTTTATCTCTAGAAAAATGAGACCAGGCACAACAAACAAATTTGCTTTTATAAAGTACAACTCTCATGTTAGAGCGACGAAGTCAATAGTTAGAATGAATGGCAAAGATTGGGGTGGTGAGTTGCTACATGTAACTTCATCAAAGGAAGCAAGGAATGCGAAGCACAGAGCTTACTTTCATAACATGGGAGTGGTAGTAAAGGAGCCAGAGCAAGATGTAGTTGGCAAGGAAGATAAGGGAACTCATAGCAGAGCGGACTCGTATACCCGAAGAAAAGAGATTGAAGCTATTTGGTCAGAAGAACAAAGATAG 546 0.4322 MRRHGMRWEEGFEREKHGEFASGVWRFNSGLGVRDWRWKQQTFMSKEIHTVLVDHLPSGVSERELYKEFGKDGYISDIFISRKMRPGTTNKFAFIKYNSHVRATKSIVRMNGKDWGGELLHVTSSKEARNAKHRAYFHNMGVVVKEPEQDVVGKEDKGTHSRADSYTRRKEIEAIWSEEQR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211513g00011 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Stsc211513g00011 181 Gene3D - 36 171 IPR012677 -
Stsc211513g00011 181 SMART rrm1_1 50 123 IPR000504 GO:0003723
Stsc211513g00011 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Stsc211513g00011 181 SUPERFAMILY RNA-binding domain, RBD 41 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211513g00011 Stsc-Chr211513 115940 116526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211513g00011 34 137 Eukaryotic Initiation Factors Gene Family AT1G22760 29.245 6.90e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211513g00011 - K13214 ahf:112794598 65.4698