Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211513g00006 ATGATGCAAATCTCCTCCACCAACAAGTACTTGCCTGAATTTGGAATGGATGATTCTGTTTCCTTCCATAATCAATATCCAGCAATGATGGATCCATCATCATGGCCCCATCAGTTTCTTGATGATCTTGACTTCAACCAAATCCAAGAATCATTCTCTTCAGCCTCATCCCCAAAGAGCTACTCCTCAACCAAGCGGTGCTTCTCAAACTCTTCTGCCCCGGCCACCACTGCGGCCGGAGCCACCATGCCACAAAACTCTTTCTCATTACCAATTGAAAGACCAACTAAGCTACAAAAAACCACTACTTGGAACAATAACAATGGCGGTAGTACCACCACCACCATTACCGGCAACAACAATGATTTCATTGTTCCCAAGGCTTCTTCCTCTTCTTCTTCACAAATCATCTCATTCGAGCAGCACTCGAACGCTTCTTCTTCGGTTGCTTCCTACAATAACAACCACCACCACCACCATCAGCAACTCTACAATAACAAACCTTCTTCCTCCGACCATGTTTTGAAGCCCAAGATTGAGAGCGTGTGCAGTGAGAGCTTCGATTTTGCCTCTGTGGTTTCTCAAGCTGATTATCTCAGTGGTTATGGTGATAATAACGCCAATAAAGGCTCCGCGGCAGCCGCGGCGGCCACCACTACCAGAAACCCAACTCAGGCCCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAGAAGCTCAGCCAGAGGTTCATTGCGCTTTCCGCCATTGTTCCTGGTCTCAAGAAGATGGACAAGGCTTCAGTATTGGGAGATGCCATCAAATATCTGAAGCAACTGCAAGAGAAAGTGAAGACTCTAGAGGAGCAAGTTGCCGAGAAAACCGTCGAATCCGCGGTTTTCGTGAAGAGATCCATCGTCTTTGCAGATGACGATGAATTCTCTTCGGACGGAAACTCGGATCAGGAAATCCCCGAGATAGAAGCAAGAATTTCAGGCAAAGATGTTCTGATTAGAGTCCACTGTGACAAACACAGTGGAAGAGTGCCAAAAATAATGAACGAGATAGAAAAGTATGACCTCACTGTTCAAAGCAGTAGCTTCTTGCCCTTTGGGAATAACTCTCTTGACATCACCATTGTTGCCCAGATGAACAAGGAATTCACCGTGACAGCCAAAGATATAATAAAAGGCTTAAATCAGTCTTTGAAGCAGCTTGTTTGA 1203 0.4564 MMQISSTNKYLPEFGMDDSVSFHNQYPAMMDPSSWPHQFLDDLDFNQIQESFSSASSPKSYSSTKRCFSNSSAPATTAAGATMPQNSFSLPIERPTKLQKTTTWNNNNGGSTTTTITGNNNDFIVPKASSSSSSQIISFEQHSNASSSVASYNNNHHHHHQQLYNNKPSSSDHVLKPKIESVCSESFDFASVVSQADYLSGYGDNNANKGSAAAAAATTTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKTLEEQVAEKTVESAVFVKRSIVFADDDEFSSDGNSDQEIPEIEARISGKDVLIRVHCDKHSGRVPKIMNEIEKYDLTVQSSSFLPFGNNSLDITIVAQMNKEFTVTAKDIIKGLNQSLKQLV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211513g00006 400 FunFam Basic helix-loop-helix family protein 221 290 - -
Stsc211513g00006 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 292 IPR036638 GO:0046983
Stsc211513g00006 400 Coils Coil 263 290 - -
Stsc211513g00006 400 Pfam Helix-loop-helix DNA-binding domain 227 274 IPR011598 GO:0046983
Stsc211513g00006 400 MobiDBLite consensus disorder prediction 147 171 - -
Stsc211513g00006 400 CDD bHLH_AtNAI1_like 226 298 - -
Stsc211513g00006 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Stsc211513g00006 400 PANTHER BHLH TRANSCRIPTION FACTOR 42 396 - -
Stsc211513g00006 400 SMART finulus 230 279 IPR011598 GO:0046983
Stsc211513g00006 400 MobiDBLite consensus disorder prediction 100 120 - -
Stsc211513g00006 400 Gene3D - 216 288 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211513g00006 Stsc-Chr211513 70498 73283 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211513g00006 132 400 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.796 2.49e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211513g00006 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211513g00006 - - adu:107482661 524.242