Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211513g00002 ATGAGGAGAGAAAAGATTAGTCAACAGGTCATAGCTCTTTCTGCTCTTATTCCAGGTCTCAAAAAGCTGGACAAGGCATCAGTGTTGACAGATGCAATAAAATATGTGAAAGAGTTGAAAGAGAAAGTGAAGGTGCTTGAAGAAGAGAACAACAAGAAGAAAGTGGTGTTTGTGAAGACAGACGAAGATGCTTCCTCCGACAACACGTCGTCACAAAACTCATGTGACGACGGAAACTCCGAAAGGTCAACGACGTTACAGCTGCCGGAGGTGGAGGCAAGAGTGTCAGAGAAGAGCGTGCTGATTCAGATTCATTGTGACAGAAACAAGGGAATGCTGCTTAACATTATTGGAGAGATACACAAACTCCATCTCTCCGTTACCAACATCGCTTCCTTCATTTTCGGATCCTCCTTTCTCCACGTAACCATCGTTGCCCAGATGGAGGATGAGTTCAGCATGAACGTGAAGGAACTGAAAAGAAGGCTGAGGGTGGGACTACTTCAATATATGTAG 516 0.4457 MRREKISQQVIALSALIPGLKKLDKASVLTDAIKYVKELKEKVKVLEEENNKKKVVFVKTDEDASSDNTSSQNSCDDGNSERSTTLQLPEVEARVSEKSVLIQIHCDRNKGMLLNIIGEIHKLHLSVTNIASFIFGSSFLHVTIVAQMEDEFSMNVKELKRRLRVGLLQYM 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211513g00002 171 PANTHER BHLH TRANSCRIPTION FACTOR 2 169 - -
Stsc211513g00002 171 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 52 IPR036638 GO:0046983
Stsc211513g00002 171 Gene3D - 1 59 IPR036638 GO:0046983
Stsc211513g00002 171 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 39 IPR011598 GO:0046983
Stsc211513g00002 171 MobiDBLite consensus disorder prediction 62 88 - -
Stsc211513g00002 171 SMART finulus 1 45 IPR011598 GO:0046983
Stsc211513g00002 171 Coils Coil 29 56 - -
Stsc211513g00002 171 Pfam Helix-loop-helix DNA-binding domain 2 39 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211513g00002 Stsc-Chr211513 20901 23767 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211513g00002 2 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.253 1.63e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211513g00002 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211513g00002 - - gmx:100803386 165.622