Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211512g00017 ATGGAAACTCTGAAAGGTGCGATTCCCGAAGGCTTGAAACGCATGATCGGTGATAGCACCGTCGATGATCTTAGCGCCACCTCTTCCTCCCTCCACAGCTTCTTCCATCACTTCGAGCCCTTCCACCAGTTACTCACTGAACTCGCGGATCCCAAGCATGCTCTCTGCGGCAAGAGCAAAGACGCTGCGCTCGAATCCAAGCAGCTCGGAAACCAGTGCTTCTCCAAAGGAGATTACGCCAATGCTCTTGATTGCTATACGCAGGCATTGCGCAAGGCACCTTTTGAGGCTAGTGATATGGAAAATAATTTTGTTGCAACCTTGTATATCAATCGAGCTACTGTATTACATAAAATGAGTCTTTTGACAGAGTGTTTGCGAGATTGCACTCGTGCCCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGAAGAGGTAAGGCAAATGCTTCCCTGGGAAATTATAAAGATGCGGAGTGTGACCTAAATATGGCTAAAATTATGGAATCATCATCGAGTGGGAAGAGACAAATAGAAAGTGAGCAGAAAAATATTTTAGACCAATGCAATAGCACAAGCACAGGATTGCAGCATAAGGAGAACACCTTGACTACAGTGGGTGAGGTTCCCCAAGGAAAGCTACAGTGTGTCACCATACCTGAGAAAGGAAGAGGCATGATATCGTCACATGACATTTCACCAGGTTCTTTGGTTCACAGTGAAGAACCTTATGCTGTGATAATATTAAAGCACTGCCGGGACAGCCATTGCCACTATTGTTTGAATGACCTACCTGCTGATCGAGTACCATGTAGATCATGTTCAGTACCACTGTATTGCTCCCAGCAGTGCCAGACAAAGGCTGGTGGGCAAGTTTTAAGGATTTTTCCAGAAGTTCATAGCGCTATTGAAAAGTTACCCAGTGACCTTGGAGAGTATGCCGTCAAAGTTATTCAAGGCCATGATTCCAAACATGAAACTGAGAATATCACTGAACATAAGCATGAATGTCAAGGTGTAAATTGGTCTGCAGTACTGCCATCAGAGGTGGTTTTAGCTGGCCGAATATTGGCGAGGTTTTTATCAGAGAGGAGGACATCAGAACATATTACGTATTTTGTGGAGAAGCTGCTGATTGTGTTATTACATTATTCCAGCTGGCTAACTATGGCATATATGCTTCTCATGCAGGAGCTTTCCCATTTTTATGAACATATGCTCCCTGAAAGCAAATTGGATACACATATATATTCCATTGTGTTATTATATTGTCTAAACCGCTCTTTTGGAGCTGCATTTTCCATTGATGAAGTCTCCATTTCTCAGGTTGTTATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAAAAGATGCTCATGGATTTTCTGATCAGTTTGGAGAATTTCCATCCTGTGCATATTTAACTAGTAATGTGGAACAGGTCAGGGTGGGTAAAGCTATTTATAAGGCTGGAAGTTTATTCAACCATTCTTGCCAACCAAATATTCATGCATATTTCCTTTCGCGTAATTTGTGTATACGGACAACAAAGGTTATACCTGCTGAGGGTCATCTGGAGTTGTCTTATGGTCCTCAGGTTGGGTTCTGGGATTGTAAAGATCGCCTTAATTTCCTCAAAGAGGAGTACATGTTTCAGTGCCAGTGTACTGGTTGTTCTAAAGTCAATCTATCCGACATTGTCCTCAATGGATTTTGCTGTGTCAATCCTAATTGTTCTGGTGCAGTGTTGGATAGCAGAGTAATTAACTGTGAAAAGCAGAAAATCAAGAACTTTATGAGCCAGTTAAAGATAGACAAGAATGATGACATTCATACAGTGCTTAACCAAAACAATGCCTCCTGTCATATTCAACCTGGACACTGTCTGAAGTGTGGTTCTTACCGTGATTTGGTGTCTTCAAGTGCTGCAGTTGATAAAGCTTTGATATTCATAAAAAGGTTACTGGATGCAATACTATCAAAAGAAATTTCAAATACCACCATTGCAGATGCTTTGAAATCCTTACATTGGTTAAGATCAAATTTGCATGCCTACAACAAGCTTATTGCAGAGGTAGAGGATAACCTTGCACAAGCCTTTTGTTTGTTGGGAGAATTACAACTATCTATGGACCATTGCAAAGCATCCATCAAGATTCTAGAGAAGTTATATCATCCTGATGATATTGTTATTGCGTATGAACTCGTGAAGCTTTGTTCGATCCAACTTTCCACAAGTGATGGTGCTGCTATGGATACCATTAGCCGGATAGGATCTCTAATTAAATGCTTTTGCACCAAAATGAGCTATAAAATGTGA 2343 0.4097 METLKGAIPEGLKRMIGDSTVDDLSATSSSLHSFFHHFEPFHQLLTELADPKHALCGKSKDAALESKQLGNQCFSKGDYANALDCYTQALRKAPFEASDMENNFVATLYINRATVLHKMSLLTECLRDCTRALQICPSYAKAWYRRGKANASLGNYKDAECDLNMAKIMESSSSGKRQIESEQKNILDQCNSTSTGLQHKENTLTTVGEVPQGKLQCVTIPEKGRGMISSHDISPGSLVHSEEPYAVIILKHCRDSHCHYCLNDLPADRVPCRSCSVPLYCSQQCQTKAGGQVLRIFPEVHSAIEKLPSDLGEYAVKVIQGHDSKHETENITEHKHECQGVNWSAVLPSEVVLAGRILARFLSERRTSEHITYFVEKLLIVLLHYSSWLTMAYMLLMQELSHFYEHMLPESKLDTHIYSIVLLYCLNRSFGAAFSIDEVSISQVVIIISQIKVNCMTVVRLKSKDAHGFSDQFGEFPSCAYLTSNVEQVRVGKAIYKAGSLFNHSCQPNIHAYFLSRNLCIRTTKVIPAEGHLELSYGPQVGFWDCKDRLNFLKEEYMFQCQCTGCSKVNLSDIVLNGFCCVNPNCSGAVLDSRVINCEKQKIKNFMSQLKIDKNDDIHTVLNQNNASCHIQPGHCLKCGSYRDLVSSSAAVDKALIFIKRLLDAILSKEISNTTIADALKSLHWLRSNLHAYNKLIAEVEDNLAQAFCLLGELQLSMDHCKASIKILEKLYHPDDIVIAYELVKLCSIQLSTSDGAAMDTISRIGSLIKCFCTKMSYKM 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211512g00017 780 SUPERFAMILY TPR-like 60 718 IPR011990 GO:0005515
Stsc211512g00017 780 SUPERFAMILY SET domain 214 563 IPR046341 -
Stsc211512g00017 780 Pfam SET domain 224 538 IPR001214 GO:0005515
Stsc211512g00017 780 ProSiteProfiles SET domain profile. 213 538 IPR001214 GO:0005515
Stsc211512g00017 780 SMART tpr_5 698 731 IPR019734 GO:0005515
Stsc211512g00017 780 SMART tpr_5 106 139 IPR019734 GO:0005515
Stsc211512g00017 780 SMART tpr_5 140 173 IPR019734 GO:0005515
Stsc211512g00017 780 SMART tpr_5 63 96 IPR019734 GO:0005515
Stsc211512g00017 780 Gene3D SET domain 435 537 IPR046341 -
Stsc211512g00017 780 Gene3D Tetratricopeptide repeat domain 544 760 IPR011990 GO:0005515
Stsc211512g00017 780 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 771 - -
Stsc211512g00017 780 Gene3D Tetratricopeptide repeat domain 37 202 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211512g00017 Stsc-Chr211512 113160 119451 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc211512g00017 SET 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211512g00017 K24634 - gmx:100783548 1045.8