Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211512g00016 ATGGAAACTCTGAAAGGTGCGATTCCCGAAGGCTTGAAACGCATGATCGGTGATAGCACCGTCGATGATCTTAGCGCCACCTCTTCCTCCCTCCACAGCTTCTTCCATCACTTCGAGCCCTTCCACCAGTTACTCACTGAACTCGCGGATCCCAAGCATGCTCTCTGCGGCAAGAGCAAAGACGCTGCGCTCGAATCCAAGCAGCTCGGAAACCAGTGCTTCTCCAAAGGAGATTACGCCAATGCTCTTGATTGCTATACGCAGGCATTGCGCAAGGCACCTTTTGAGGCTAGTGATATGGAAAATAATTTTGTTGCAACCTTGTATATCAATCGAGCTACTGTATTACATAAAATGAGTCTTTTGACAGAGTGTTTGCGAGATTGCACTCGTGCCCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGAAGAGGTAAGGCAAATGCTTCCCTGGGAAATTATAAAGATGCGGAGTGTGACCTAAATATGGCTAAAATTATGGAATCATCATCGAGTGGGAAGAGACAAATAGAAAGTGAGCAGAAAAATATTTTAGACCAATGCAATAGCACAAGCACAGGATTGCAGCATAAGGAGAACACCTTGACTACAGTGGGTGAGGTTCCCCAAGGAAAGCTACAGTGTGTCACCATACCTGAGAAAGGAAGAGGCATGATATCGTCACATGACATTTCACCAGGTTCTTTGGTTCACAGTGAAGAACCTTATGCTGTGATAATATTAAAGCACTGCCGGGACAGCCATTGCCACTATTGTTTGAATGACCTACCTGCTGATCGAGTACCATGTAGATCATGTTCAGTACCACTGTATTGCTCCCAGCAGTGCCAGACAAAGGCTGGTGGGCAAGTTTTAAGGATTTTTCCAGAAGTTCATAGCGCTATTGAAAAGTTACCCAGTGACCTTGGAGAGTATGCCGTCAAAGTTATTCAAGGCCATGATTCCAAACATGAAACTGAGAATATCACTGAACATAAGCATGAATGTCAAGGTGTAAATTGGTCTGCAGTACTGCCATCAGAGGTGGTTTTAGCTGGCCGAATATTGGCGAGGTTTTTATCAGAGAGGAGGACATCAGAACATATTACGTATTTTGTGGAGAAGCTGCTGATTGTGTTATTACATTATTCCAGCTGGCTAACTATGGCATATATGCTTCTCATGCAGGAGCTTTCCCATTTTTATGAACATATGCTCCCTGAAAGCAAATTGGATACACATATATATTCCATTGTGTTATTATATTGTCTAAACCGCTCTTTTGGAGCTGCATTTTCCATTGATGAAGTCTCCATTTCTCAGGTTGTTATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAAAAGATGCTCATGGATTTTCTGATCAGTTTGGAGAATTTCCATCCTGTGCATATTTAACTAGTAATGTGGAACAGGTCAGGGTGGGTAAAGCTATTTATAAGGCTGGAAGTTTATTCAACCATTCTTGCCAACCAAATATTCATGCATATTTCCTTTCGCGTAATTTGTGTATACGGACAACAAAGGTTATACCTGCTGAGGGTCATCTGGAGTTGTCTTATGGTCCTCAGGTTGGGTTCTGGGATTGTAAAGATCGCCTTAATTTCCTCAAAGAGGAGTACATGTTTCAGTGCCAGTGTACTGGTTGTTCTAAAGTCAATCTATCCGACATTGTCCTCAATGGATTTTGCTGTGTCAATCCTAATTGTTCTGGTGCAGTGTTGGATAGCAGAGTAATTAACTGTGAAAAGCAGAAAATCAAGAACTTTATGAGCCAGTTAAAGATAGACAAGAATGATGACATTCATACAGTGCTTAACCAAAACAATGCCTCCTGTCATATTCAACCTGGACACTGTCTGAAGTGTGGTTCTTACCGTGATTTGGTGTCTTCAAGTGCTGCAGTTGATAAAGCTTTGATATTCATAAAAAGGTTACTGGATGCAATACTATCAAAAGAAATTTCAAATACCACCATTGCAGATGCTTTGAAATCCTTACATTGGTTAAGATCAAATTTGCATGCCTACAACAAGCTTATTGCAGAGGTAGAGGATAACCTTGCACAAGCCTTTTGTTTGTTGGGAGAATTACAACTATCTATGGACCATTGCAAAGCATCCATCAAGATTCTAGAGAAGTTATATCATCCTGATGATATTGTTATTGCGTATGAACTCGTGAAGCTTTGTTCGATCCAACTTTCCACAAGTGATGGTGCTGCTATGGATACCATTAGCCGGATAGGTGATATTTTCTCATGTTATTATGGACTTCATGCGGACTTGGTTTTCCCATATCTTAAATACCTTAGGAGATAA 2370 0.4097 METLKGAIPEGLKRMIGDSTVDDLSATSSSLHSFFHHFEPFHQLLTELADPKHALCGKSKDAALESKQLGNQCFSKGDYANALDCYTQALRKAPFEASDMENNFVATLYINRATVLHKMSLLTECLRDCTRALQICPSYAKAWYRRGKANASLGNYKDAECDLNMAKIMESSSSGKRQIESEQKNILDQCNSTSTGLQHKENTLTTVGEVPQGKLQCVTIPEKGRGMISSHDISPGSLVHSEEPYAVIILKHCRDSHCHYCLNDLPADRVPCRSCSVPLYCSQQCQTKAGGQVLRIFPEVHSAIEKLPSDLGEYAVKVIQGHDSKHETENITEHKHECQGVNWSAVLPSEVVLAGRILARFLSERRTSEHITYFVEKLLIVLLHYSSWLTMAYMLLMQELSHFYEHMLPESKLDTHIYSIVLLYCLNRSFGAAFSIDEVSISQVVIIISQIKVNCMTVVRLKSKDAHGFSDQFGEFPSCAYLTSNVEQVRVGKAIYKAGSLFNHSCQPNIHAYFLSRNLCIRTTKVIPAEGHLELSYGPQVGFWDCKDRLNFLKEEYMFQCQCTGCSKVNLSDIVLNGFCCVNPNCSGAVLDSRVINCEKQKIKNFMSQLKIDKNDDIHTVLNQNNASCHIQPGHCLKCGSYRDLVSSSAAVDKALIFIKRLLDAILSKEISNTTIADALKSLHWLRSNLHAYNKLIAEVEDNLAQAFCLLGELQLSMDHCKASIKILEKLYHPDDIVIAYELVKLCSIQLSTSDGAAMDTISRIGDIFSCYYGLHADLVFPYLKYLRR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211512g00016 789 Pfam SET domain 224 538 IPR001214 GO:0005515
Stsc211512g00016 789 Gene3D Tetratricopeptide repeat domain 544 782 IPR011990 GO:0005515
Stsc211512g00016 789 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 788 - -
Stsc211512g00016 789 Gene3D SET domain 226 256 IPR046341 -
Stsc211512g00016 789 ProSiteProfiles SET domain profile. 213 538 IPR001214 GO:0005515
Stsc211512g00016 789 SMART tpr_5 698 731 IPR019734 GO:0005515
Stsc211512g00016 789 SMART tpr_5 106 139 IPR019734 GO:0005515
Stsc211512g00016 789 SMART tpr_5 140 173 IPR019734 GO:0005515
Stsc211512g00016 789 SMART tpr_5 63 96 IPR019734 GO:0005515
Stsc211512g00016 789 SUPERFAMILY SET domain 214 563 IPR046341 -
Stsc211512g00016 789 SUPERFAMILY TPR-like 60 718 IPR011990 GO:0005515
Stsc211512g00016 789 Gene3D SET domain 435 537 IPR046341 -
Stsc211512g00016 789 Gene3D - 257 290 - -
Stsc211512g00016 789 Gene3D Tetratricopeptide repeat domain 37 202 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211512g00016 Stsc-Chr211512 113152 119451 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc211512g00016 SET 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211512g00016 K24634 - gmx:100783548 1088.56