Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211511g00012 ATGTGTCCTGCGTGCCGTGGTATTTGTAACTGTAGAATTTGTGTACGTAGTGATAATTCAATAAAGGTTCGGATACGGGAGATACCTGTTCTAGATAAATTACAGTATCTCCACTCGCTGTTGTCGGCAGTGCTTCCTGTAGTAAAACAGATCCATCAAGAACAGTGTTTTGAAGTTGAGCTCGAAAAGAAGTTGCGTGGTGCTGACATAGATCTTCCCCGGATAAAATTGGGGGCAGATGAGCAGATGTGCTGCAATTTATGTAGGATACCCATTACTGATTATCATCGGCGCTGTCCAATTTGCTCATATGACTTATGCCTTAATTGTTGTCATGACCTTCGAGAAGCAACATCAAATCCCAACAAAGAACCGCAAACAGAATTAGCGAAAGCTTATGACCAAAACATATTAAGTAAGTTTCCTCATTGGAGATCTGACGATAATGCAAATATTCCATGCCCCCCTAAGGAATATGGTGGCTGTGGTTATTCCTCGTTAAATTTAAGCAGGATTTTTAAGAGGAATTGGGTTGCAAAGTTGGTGAAAAATGTAGAAGAAATGGTTGGTGGATGTAAGATTAATAATGCTGATGATCTACCAGAAACTGAGTTGAATGCTCTCAGATTGCACAAATTTTCTCATAGAGAGACTAGTGATGATAACTATCTTTATTGTCCTGCATCTGAAGATCTCATAAAAGATGGGATTGGAAAATTTAGAAAGCACTGGAAAGCCGGTGAACCCATTATTGTTAAGCAAGTGTTTGATAGGTCATCCTTTTCTAGCTGGGATCCGTTGGTCATCTGGAGAGGGATTCTAGAGACAACAGATGAGAAAATGAAAGATGAAAACAGAGTGGTGAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTAGTTACTTCATGACCGGTTACACTGAGGGACGTACTCATGAAAATGGTTGGCCACAGTTATTGAAGTTGAAAGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTCTCTTGTACCAAAGACCGGAATTTATCGGCAAACTGCCCTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGTATCAATCATGAACTTGGTAGAGGCGATCCAGTGACCAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTAATGCTGAAGGACTGGCAGAGAACTAAAATTGAAATAATCCAAAAAGAATACAAGGAGTCAGAGGTGAAGGAATCACCTGGGGTTCAACAAATGTGTTCTGGCAGGAGTTCACCTAACATGTCATTTGGTACAGAAAATAATGGGCTGGATTTGGAGTCAAACCAGACTAAGTCAATGGATCAAGGATTTAGTCATTCTAATTCTGATGGGAATATGGTCAATCATGAACATCCATTCGAACAAAATGGAGATTTCTCTGAGAAAAAGCATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGTTGAATGAATATTTGAATATACACTGGAAGGAATTTGGAAAGCCAAATGATGCATTAAATGAATATGTTACATGCCCTCTTTATGACGGAGCTATTTTTCTTGACAGACACCAAAAAAGAAAGCTGAAGGAAGAATTTGGAGTGGAGCCCTGGTCATTTGAACAGAATTTAGGGGAAGCTATCTTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGTTGGGGTTAGATTTCTTATCTCCTGAAAGCCTGGGAGAGGCTGTAAGATTGGCAGAGGAAGTCCGCAGTCTACCGAATGAACATGAAGCAAAACCTCAAGTATTGGAGGTCGGGAAGATATCTCTTTACGCCGCAAGCTCATCCATCAAAGAGGTTCAGAAACTTGTACTTGATCCAAAGCTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTATCTGAGAATTACGAGAAGATGGTTAAGCGAAGGCAGATTACTTGCGCTTGA 2085 0.4082 MCPACRGICNCRICVRSDNSIKVRIREIPVLDKLQYLHSLLSAVLPVVKQIHQEQCFEVELEKKLRGADIDLPRIKLGADEQMCCNLCRIPITDYHRRCPICSYDLCLNCCHDLREATSNPNKEPQTELAKAYDQNILSKFPHWRSDDNANIPCPPKEYGGCGYSSLNLSRIFKRNWVAKLVKNVEEMVGGCKINNADDLPETELNALRLHKFSHRETSDDNYLYCPASEDLIKDGIGKFRKHWKAGEPIIVKQVFDRSSFSSWDPLVIWRGILETTDEKMKDENRVVKAIDCLDGSEIDIELSYFMTGYTEGRTHENGWPQLLKLKDWPSPSASEEFLLYQRPEFIGKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGINHELGRGDPVTNLHFNMRDMVYLLVHTSEVMLKDWQRTKIEIIQKEYKESEVKESPGVQQMCSGRSSPNMSFGTENNGLDLESNQTKSMDQGFSHSNSDGNMVNHEHPFEQNGDFSEKKHPGVLWDVFRRQDVPKLNEYLNIHWKEFGKPNDALNEYVTCPLYDGAIFLDRHQKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRSLPNEHEAKPQVLEVGKISLYAASSSIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211511g00012 694 Pfam JmjC domain, hydroxylase 546 603 IPR003347 -
Stsc211511g00012 694 Gene3D Cupin 222 633 - -
Stsc211511g00012 694 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 658 IPR045109 GO:0032454|GO:0033169
Stsc211511g00012 694 SUPERFAMILY Clavaminate synthase-like 241 627 - -
Stsc211511g00012 694 SMART cupin_9 339 624 IPR003347 -
Stsc211511g00012 694 ProSiteProfiles JmjC domain profile. 332 624 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211511g00012 Stsc-Chr211511 69406 75569 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc211511g00012 JmjC 1.9e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211511g00012 K15601 - gmx:100792166 1179.08