Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211511g00001 ATGGGTTATTGTGGTGGTCGTGGCTATGAAGCTCTAAGCATGTTGTTCTTCATCATCATCACCTTCTTCATGATGATTCTGCTGTCATCATTGCAGAAAAGAACCCACATTATTGTTACTGTGGATTCTCTGTGGAATAATAATTTTCATGTTCAAGACATGGATTTCAATTATGGAAACAACAACAAGAAGAAAAATGTTGAGAAAATCTCAGGTTTGGATGAGAATGAAGTGAAGCAAGCCATGTTTGTTGAAAAATTCAGAACATTGCTTGGACTCAACAGCTTCCACAAAAAAACACCTTCATTCTCACTCTCATTCTCTCCTTCACCTTCTCCATCACCAACAAGCATTACTGAACCTGAAGCTGTAGGTCCATTATCTCCAGCACCTTCTCCAATGGCTCACAACCATCATCTTCGTCGTCATCATCATTATTATCATTCATATTGGAATCCAAAGAAAGAAGCTCATCATCATCATGATGAAGAAGATAGAGGCAGAGCTAAGAAAATACTAGTAGCTATTCTTGTTTCTGTGGGAATTGCTGCATTAATCTGTGGTTGTGCCTTAATCTTGTTCTGCAGGAAGAAATTCAGGAACCAAAGGAAGAAACCAAAAAGGACAATGCCGCTTTGTAGCAACAAGAACAAGAACAAGGTGAGTTTAAACTCAGGGCTAGATCTGTTTTATCTTGATTCGTTAGGTGAAGATATTGAACAACAACAACAACAAGAAGAAGCATCAGCCTACACCTTGAAAGAAATTAGTTATGAGAATAGTGACAATCTTAGTAGTTCTTCCACAAAGGAGATTCTACCTGTTCATGAAGAAGAAGAAGAATATATGGAAATGGAGGCAGTTGTGAAAGATGAATATCAATCTGAAGCTGAATCTGGTGGAAGAGAAATTGGAGTCCCTGCTAACAACCCTGAAGAACAAGAAGAGGATCATTCATCAGAGGATGAAAGTTTTCATTCAATTATTGATTCACAAACAAATTCAAGACTCTCTAATGCTTCAACTTCTAGCCTTATTAGTGAAACATTAATGTCACCAAAGGATTTATCAACACCAAATAACTCAATTTCAAACCCTAAACCACTACAATCTACTCCAAAACTTGATGAAAATCAAGAAATTGAGACTACTAACCAATTTGCCAAACCCTCCACGCCTCCACCGCCTCCTCCTCCGCCACCGCCACCGCCACCGCCACCACCAACACCGCCTCTTCAAATGCCACTATTCAGATTACATTCTCTCACTTCTTCATCCAGAGCTTCCTCTCCCTCTCCGCTTTCTTTAAAATCTCATAACCTCTCATCACCGTCTCCAAGAAACTCAGACCCAAATCAAAGTCCGCGAACAGAATTGCCTTCTCCGCCGCCGCAACCGGCGAAGTCTCCATGCATCAACAACATTCCGGCACCGCCGTGTCCGCCACCGCCGTTTCCAAAGGGCAATAGCGTAAAAACACCACCTCCTCCACCATCTCAACTACCTCAATTCACAGCAGTAGGCAAAGATGGAACACCGCTTCCAAAACTGAAACCGCTTCATTGGGACAAAGTAAGAGCGGCACCAAATCGCACTATGGTTTGGGATAAACTAAGATCAAGCTCCTTTGAGTTGGATGAGGAAATGATTGAGTCACTTTTTGGATACAATTTACAAAGTTGTATGAAGAATGAGGAAACAAAGAGCAAAAGCCCTTCTCCAAGCAAGCATATTCTAGAGCCTAAACGGCTGCAGAACATTACCATTCTCTTCAAAGCTATAAATGCAACACCTGAAAATGTATGTCAAGCCTTAATACAAGGTAAAGGGCTTTGTTTGCAACAACTAGAGGCATTGGTGAAAATGGTGCCCACAAAGGAAGAGGAGGGGAAGCTTGCCAACTATAGAGGCGACATGAATGAATTGGGGTCCGCAGAGAGGTTTGTGAGGGCAATGCTTCAAGTCCCATTTGCCTTTCAAAGAGTACAAGGCATGCTTTACAAAGAGACTTTTGAAGATGAAGTTGTTCACCTAAGGAACTCTTTTTCAATGCTAGAGGAGGCATGCAAGGAACTAAGATCAAGCAGGCTCTTCTCGAAGTTACTAGAAACCGTTCTGAAGACAGGGAACCGCATGAACGTTGGGACGATCCGCGGTGGTGCGAGAGCATTCAAGCTCGACGCCCTTCTCAAGCTAGCAGACGTCAAAGGCATTGATGGCAAAACCACGTTGCTCCACTTTGTGGTTCAAGAAATTGTCCGGTCCGAAGGGATTCGAGTTTCCGACAGCATAATGGGAAAAATAAGCCAGAAGAGCAATAAAAACAGGACAGAAGAGCAAAAGGAAGAAGACTACCGAAGAATGGGACTCGAGTTAGTCTCCGGCCTTAGCACGGAGCTTTACAACGTGAAGAAAACCGCCACGGTCGACTTAGACGTTCTTGCAAGATCAGTGTCAAATCTGTCCGAAGAAATGACTAAGCTAAAACAGCTAATTGAAAAAGATTTGCATAACGATGATGACAGAGAGAGTAATAGTGGTGAGGGGTTTATTAACACTATGAAGTGCTTCTTGAGTTATGCTGAGAAGAAGCTGAAGGAGTTGGAAAGTGACGAGAATAGAGTGTTGTCACGTGTGAAGGAGATAACAGAGTATTTTCATGGTGATGTGAGCAACAAAGAAGATCAAAACCCACTTAGGATCTTTGTTATAGTGAGGGATTTCTTGGGGATGTTGGATAGTGTGTGTAAAGAGCTTAGAAGGAACAAATCTACTCGTAGCCCAAACCCTCTTGCACCATTTAGATAG 2808 0.4224 MGYCGGRGYEALSMLFFIIITFFMMILLSSLQKRTHIIVTVDSLWNNNFHVQDMDFNYGNNNKKKNVEKISGLDENEVKQAMFVEKFRTLLGLNSFHKKTPSFSLSFSPSPSPSPTSITEPEAVGPLSPAPSPMAHNHHLRRHHHYYHSYWNPKKEAHHHHDEEDRGRAKKILVAILVSVGIAALICGCALILFCRKKFRNQRKKPKRTMPLCSNKNKNKVSLNSGLDLFYLDSLGEDIEQQQQQEEASAYTLKEISYENSDNLSSSSTKEILPVHEEEEEYMEMEAVVKDEYQSEAESGGREIGVPANNPEEQEEDHSSEDESFHSIIDSQTNSRLSNASTSSLISETLMSPKDLSTPNNSISNPKPLQSTPKLDENQEIETTNQFAKPSTPPPPPPPPPPPPPPPPTPPLQMPLFRLHSLTSSSRASSPSPLSLKSHNLSSPSPRNSDPNQSPRTELPSPPPQPAKSPCINNIPAPPCPPPPFPKGNSVKTPPPPPSQLPQFTAVGKDGTPLPKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQSCMKNEETKSKSPSPSKHILEPKRLQNITILFKAINATPENVCQALIQGKGLCLQQLEALVKMVPTKEEEGKLANYRGDMNELGSAERFVRAMLQVPFAFQRVQGMLYKETFEDEVVHLRNSFSMLEEACKELRSSRLFSKLLETVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGIDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQKSNKNRTEEQKEEDYRRMGLELVSGLSTELYNVKKTATVDLDVLARSVSNLSEEMTKLKQLIEKDLHNDDDRESNSGEGFINTMKCFLSYAEKKLKELESDENRVLSRVKEITEYFHGDVSNKEDQNPLRIFVIVRDFLGMLDSVCKELRRNKSTRSPNPLAPFR 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211511g00001 935 PRINTS Proline rich extensin signature 403 424 - -
Stsc211511g00001 935 PRINTS Proline rich extensin signature 358 370 - -
Stsc211511g00001 935 PRINTS Proline rich extensin signature 391 403 - -
Stsc211511g00001 935 PRINTS Proline rich extensin signature 477 502 - -
Stsc211511g00001 935 PRINTS Proline rich extensin signature 452 469 - -
Stsc211511g00001 935 Pfam Formin Homology 2 Domain 509 912 IPR015425 -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 389 414 - -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 326 388 - -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 418 455 - -
Stsc211511g00001 935 ProSiteProfiles Formin homology-2 (FH2) domain profile. 507 935 IPR015425 -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 103 125 - -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 456 502 - -
Stsc211511g00001 935 Coils Coil 811 831 - -
Stsc211511g00001 935 Gene3D Formin, FH2 domain 530 929 IPR042201 -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 292 515 - -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 309 325 - -
Stsc211511g00001 935 SMART it6_source 507 927 IPR015425 -
Stsc211511g00001 935 MobiDBLite consensus disorder prediction 103 121 - -
Stsc211511g00001 935 PANTHER FORMIN-RELATED 427 924 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc211511g00001 935 SUPERFAMILY Formin homology 2 domain (FH2 domain) 520 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211511g00001 Stsc-Chr211511 4269 16947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211511g00001 492 935 FH2 protein (formin) Gene Family AT3G05470 71.973 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211511g00001 - - aip:107618869 1308.89