Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211510g00019 ATGCATTCGAGTTCGAGTTCTGCTTCTGTTGGTACTGGCCGTCACCCCGTATACCGCGGGGTGAGGCGTAGAAGTAGTGGAAAATGGGTGTCGGAAATTCGGGAGCCGAAGAAGCCTAATAGAATTTGGTTAGGGACATTCCCTACTCCAGAAATGGCTGCGGTTGCATATGATGTAGCCGCTCTTGCCCTAAAAGGTAAGGACGCGGAGTTAAACTTTCCTAATTCGGCTTCTTCGCTCCCGGTTCCGGCTACCTTATCCCCACGTGACATTCAAGCGGCAGCGGCTAGTGCTGCCTCGGCTGCCGGGGCAGCAAAAGACGCTTTGAATGCTGAAGGATCAGGCTCAGGCTCAAGCCAAGGGAATATTAATAAAAATAATGATGCTAATAATGTTCCTTCTTCATCAATGGCACATGACTTTGTGGATGAGGATTTGATCTTTGACATGCCTAATGTTTTGGTGAACATGGCTGAAGGAATGCTTCTTAGCCCTCCTCCTTTTGACATTGGTGGTGGTGATGATGCTCCAGAAAACATGGATGAGCCAAGCCTCTGGAATTTCCCTTAA 570 0.486 MHSSSSSASVGTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAELNFPNSASSLPVPATLSPRDIQAAAASAASAAGAAKDALNAEGSGSGSSQGNINKNNDANNVPSSSMAHDFVDEDLIFDMPNVLVNMAEGMLLSPPPFDIGGGDDAPENMDEPSLWNFP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211510g00019 189 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Stsc211510g00019 189 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Stsc211510g00019 189 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Stsc211510g00019 189 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Stsc211510g00019 189 MobiDBLite consensus disorder prediction 1 32 - -
Stsc211510g00019 189 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Stsc211510g00019 189 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Stsc211510g00019 189 MobiDBLite consensus disorder prediction 112 136 - -
Stsc211510g00019 189 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Stsc211510g00019 189 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Stsc211510g00019 189 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Stsc211510g00019 189 MobiDBLite consensus disorder prediction 166 189 - -
Stsc211510g00019 189 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 187 IPR045277 GO:0003700
Stsc211510g00019 189 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211510g00019 Stsc-Chr211510 150922 151491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211510g00019 13 189 AP2-EREBP Transcription Factor Family AT2G36450 61.905 1.91e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211510g00019 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211510g00019 - - pvu:PHAVU_007G222600g 238.424