Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211510g00018 ATGCAAAAGAGAAGGGCAGGGAGGAAGAAGTTCCAAGAGACAAGACACCCAATCTACAAAGGTGTGAGGCAAAGGAATGGAAAATGGGTTTGTGAGCTTAGGCAACCAAACAACAAAACTAGGGTTTGGCTTGGAACTTTTTCTCACCCTCACATGGCGGCTATAGCCCATGATGTCGCCGCCTTGGCCTTCCGGGGCGACAATGCTTCCCTAAATTTTCCTGAGTCGGCCGTCTCGCTGCCAAGGCTCGACGCTGAAACCACTTCTCTCAAAACAATCCAGTTAACCGCGACGCAGGCGGCTAACAACCACTTTCTTGAAGCCAAAGAAGAGATGAGTAGTATCCTTGGAAGTAGTAGCAATAGTAATAGTAATAATAATAATAATAATAATAATAATAGTAGCAATGATGGTTCTTTTTCTTCTTCTTCTCATGAGGAGGAATTGTCTTCGGATTATTTTAGTTTGGGAGAAGATTCTAGAAGCTTCTATTGGGATGAAGATGGAGTGTTTAACATGCCAGTGTTGATGAATAGCTTGGCTGAAGGCTTGATTATAACTCCACCGGCTTTGGAAAGAGGCTTCAATTGGGTTGGTGTAGAAACTACCATGGAGTTGACTCTATGGGGTGATTGA 636 0.4371 MQKRRAGRKKFQETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFSHPHMAAIAHDVAALAFRGDNASLNFPESAVSLPRLDAETTSLKTIQLTATQAANNHFLEAKEEMSSILGSSSNSNSNNNNNNNNNSSNDGSFSSSSHEEELSSDYFSLGEDSRSFYWDEDGVFNMPVLMNSLAEGLIITPPALERGFNWVGVETTMELTLWGD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211510g00018 211 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Stsc211510g00018 211 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Stsc211510g00018 211 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Stsc211510g00018 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 209 IPR045277 GO:0003700
Stsc211510g00018 211 MobiDBLite consensus disorder prediction 116 144 - -
Stsc211510g00018 211 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Stsc211510g00018 211 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Stsc211510g00018 211 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Stsc211510g00018 211 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Stsc211510g00018 211 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211510g00018 Stsc-Chr211510 142031 142666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211510g00018 3 209 AP2-EREBP Transcription Factor Family AT4G25470 41.827 2.39e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211510g00018 AP2 4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211510g00018 - - gmx:100778541 253.832