Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211510g00006 ATGGGAGAGAAGATTTGTTGGAACATTGGTGTGTTTGTGGCACTAATGCTTGTGTTGAGTATGAATAATAATTACAATGAGTCATCATCAACAAGTTCTTCAAGTGATGAATTCATCAGCTACAACAACATAAACAACAAGTTGATGATGGAGAAGAAGGTATGTGATGAAATATACGTGGTTGGTGAGGGAGAGACACTTCAAACAATAAGTGAGAAGTGTGGTGATCCTTTCATTGTTGAAGAGAATCCACACATACATGATCCAGATGATGTCTTCCCTGGACAAATTGAGGTGAAAGCTGAGGCAAGTTTTCAAAAGCATAAGCCTACAAAGTTGTTCATATTTGGAGACTCATATGCTGATACTGGTAACACTATAAAGAATAATTCTTTCTCATGGAAAGAACCTTATGGCATAACCTTTCCCGGAAAACCCGCCGGAAGATTCTCCGACGGTAGAGTTTTCACCGATTTCATTGCTAAGTATTTGGGACTAAAATCACCAGTGCCCTACAACTTGAGGAAAATGATGATGGCAAATAATAATTTGGAATATGGAATAAACTTTGCCGTTGGTGGCACCGGAGTGTTTGATACTGATATCAAACCAAACATGACAACACAAATTGATTTCTTTGAAGAAATCATCATCAAAGACAAAGTTTACAATGCTTCAGATCTCACCAACTCTTTGGCTTATGTCTCCGTAGCTGGAAATGATTACAATTATTACTTGGCTACACACACTAATGACTCCATTTCGGGTATATTACCATTCATTCGCTTAGTGGTTAATCAAACCGCCACAAATATAATCAGAATCCACAAATTGGGAGTGAAGAAAATTGCTGTTGGTATGTTACAACCAATTGGTTGCCTTCCCCTAATAACATCCCAATCCTCATTCCAAAATTGCAATGACACAATCAACATACTTGTGGATATACACAATGCCCTCTTGACCCAAACTATTGCCAAATTGAACCAAGAAGCCCAAAATGGTAATTCTAAATTCCTAATCCTCAACCTCTATGATAGCTTCAATTCAGCCCTAGGGCACCATAAAACCTACAACAAAAACAATAACAAAGCATTGATCCCTTGTTGTGTTGGTATAAGCAAAGAGTATGTGTGTGGAAGTGTGGAGAATAATGTGAAGAAGTATGAGGTTTGTGAAAACCCTAAAAAAGCTTTCTTTTGGGACCTTTTTCACCCTACACAAGCTGGTTGGCATGCTGTTTATAAAAAGTTGCAATCCATGGGTGATCTTCATCAACTTTTATCCTAA 1290 0.3783 MGEKICWNIGVFVALMLVLSMNNNYNESSSTSSSSDEFISYNNINNKLMMEKKVCDEIYVVGEGETLQTISEKCGDPFIVEENPHIHDPDDVFPGQIEVKAEASFQKHKPTKLFIFGDSYADTGNTIKNNSFSWKEPYGITFPGKPAGRFSDGRVFTDFIAKYLGLKSPVPYNLRKMMMANNNLEYGINFAVGGTGVFDTDIKPNMTTQIDFFEEIIIKDKVYNASDLTNSLAYVSVAGNDYNYYLATHTNDSISGILPFIRLVVNQTATNIIRIHKLGVKKIAVGMLQPIGCLPLITSQSSFQNCNDTINILVDIHNALLTQTIAKLNQEAQNGNSKFLILNLYDSFNSALGHHKTYNKNNNKALIPCCVGISKEYVCGSVENNVKKYEVCENPKKAFFWDLFHPTQAGWHAVYKKLQSMGDLHQLLS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211510g00006 429 CDD SGNH_plant_lipase_like 113 418 IPR035669 -
Stsc211510g00006 429 CDD LysM 58 96 IPR018392 -
Stsc211510g00006 429 Pfam GDSL-like Lipase/Acylhydrolase 113 417 IPR001087 GO:0016788
Stsc211510g00006 429 SUPERFAMILY SGNH hydrolase 109 418 - -
Stsc211510g00006 429 Gene3D LysM domain 50 102 IPR036779 -
Stsc211510g00006 429 Gene3D SGNH hydrolase 103 422 IPR036514 -
Stsc211510g00006 429 PANTHER OSJNBB0059K02.9 PROTEIN 100 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211510g00006 Stsc-Chr211510 42468 48940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211510g00006 113 418 Pollen Coat Proteome AT1G75910 28.746 2.64e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211510g00006 - - gmx:100818373 415.231