LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211509g00017	ATGGGGCGCGTGAGAACGAAGACGGTGAAGAAATCTTCACGGCAAGTGATCGAGAGGTACTACTCTCGCATGACCCTCGACTTCCACACCAACAAGAAGGTTCTCACTGAAGTCGCACTCATCCCTTCCAAGAGGCTCCGTAACAAGATCGCTGGTTTCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCGGTCAGAGGCATCTCCCTCAAGCTCCAAGAGGAGGAGAGGGAGCGTCGCATGGACTTCGTTCCTGATGTTTCCGCCATTGACACTCAGCACATTGAGGTCGATAAGGAAACTATTGATATGCTTCAATCCCTAGGTATGTCTGACATCCCTGGAATCACTCAGGTTGATCCTGTTCCTGTTCAGCAGATCTCCTTTGGACGCCCTGCTGGTGGATTTGGTGGTGCTCAGAGGAGGTGCGGATTGGCCATGTCTTTAAGGAAAGCAATCGAGTAG	468	0.5192	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLTEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIDTQHIEVDKETIDMLQSLGMSDIPGITQVDPVPVQQISFGRPAGGFGGAQRRCGLAMSLRKAIE	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211509g00017	155	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211509g00017	155	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211509g00017	155	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211509g00017	155	FunFam	40S ribosomal protein S17	1	62	-	-
	Stsc211509g00017	155	PANTHER	40S RIBOSOMAL PROTEIN S17	1	125	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211509g00017	155	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211509g00017	155	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211509g00017	Stsc-Chr211509	119904	122075	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211509g00017	1	143	Cytoplasmic Ribosomal Protein Gene Family	AT2G04390	80.420	4.11e-76	221

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211509g00017	K02962		-	gmx:100527036	236.113