Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211509g00012 ATGAAGATGAAGACCAAAACACCATTGAAGCAGCTCAAGCTCGCTGTTCCTGCTCAAGAAACACCCATCACTTCATTCCTGACTGCAAGTGGCACATTTCATGATGGAGATCTGCTGTTGAATCAGAAAGGATTGCGTCTCATATCTGAAGAGAAAGAATCAAGGCCTTCCGATGGTAAGCAACTTGAATTCGATTTTTCCCTCGATGACCTTGAGACCATCAAAGTGATTGGAAAAGGCAGTGGTGGTGTAGTGCAACTTGTTCAACATAAGTGGGTTGGAAGATTGTTTGCTCTGAAGGTCATTCAGATGAACATACAGGAGGAGATTCGAAAACAGATTGTTCAGGAACTGAAAATAAACCAAGCTTCACAATGTCCACATGTTGTGGTTTGTTACCACTCATTCTACCATAACGGAGTTATATCTCTTGTTTTAGAATACATGGATCGTGGTTCTCTCGCAGATGTAATCAGACAAGTTAAAACAATTCTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTGTTACAAGGTCTTCTTTACCTGCATAATGAGAGACACGTGATACATAGGGACCTCAAACCATCCAATCTATTAGTCAATCACAAAGGGGAGGTGAAGATTACCGATTTCGGCGTTAGCGCTATGTTGGCAAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTACAACTACATGTCGCCAGAAAGAATTAGTGGGAGTACTTATGATTATAGCAGCGATATCTGGAGTTTGGGCTTGGTGGTACTTGAGTGCGCCATAGGAAGGTTTCCTTACATTCAATCTGAGGATCAGCAATGCTCCCCTAGTTTCTATGAGCTTCTGGAGGCAATTGTCGAAAGACCCCCACCTTCGGCTCCAGCAGATCAATTCTCTCCAGAGTTTTGTTCATTTGTATCGTCCTGCATCCAAAAAGATCCACGTGATAGATTGACATCATTGGAGCTTCTGGAGCATCCTTTCATAAAAAAGTTTGAAGACAAAGATCTTGATCTTGGAATTTTAGTAGGTAGCTTGGAGCCTCCTGTAAATTTTGCCAGATAA 1071 0.4211 MKMKTKTPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKQLEFDFSLDDLETIKVIGKGSGGVVQLVQHKWVGRLFALKVIQMNIQEEIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVLQGLLYLHNERHVIHRDLKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGLVVLECAIGRFPYIQSEDQQCSPSFYELLEAIVERPPPSAPADQFSPEFCSFVSSCIQKDPRDRLTSLELLEHPFIKKFEDKDLDLGILVGSLEPPVNFAR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211509g00012 356 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211509g00012 356 Pfam Protein kinase domain 72 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211509g00012 356 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Stsc211509g00012 356 SUPERFAMILY Protein kinase-like (PK-like) 68 343 IPR011009 -
Stsc211509g00012 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Stsc211509g00012 356 Gene3D Phosphorylase Kinase; domain 1 40 150 - -
Stsc211509g00012 356 Gene3D Transferase(Phosphotransferase) domain 1 152 345 - -
Stsc211509g00012 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 18 333 - -
Stsc211509g00012 356 FunFam Mitogen-activated protein kinase kinase 6 152 350 - -
Stsc211509g00012 356 CDD PKc_MAPKK_plant_like 69 335 - -
Stsc211509g00012 356 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Stsc211509g00012 356 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211509g00012 Stsc-Chr211509 76532 80779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211509g00012 3 356 MAP Kinase Kinase Gene Family AT5G56580 84.789 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Stsc211509g00012 Pkinase 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211509g00012 K04368 - gmx:100786284 677.552