Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211509g00006 ATGGCCGCTGTTCGCTCTAACAACCACAACCGCCACGTCATCTGCATGTTCTTGTTCATTGCAGTCTCTCTCTACAACCTCCCACTGTCTCTCTCAGGGGACACGGAGGCCCTTCTAAAGCTGAAACAATCCCTCACCAACGCCGATCGCGTGCTCGACACGTGGGTACCCAACGCGTTACCTTGCAGCTGGCTGGGCGTTGTCTGCTTCAACGGCATGGTAACGGGCCTTCGCCTCTCCGACATGGGCCTCTCAGGTACCATCAACATAGACGCTCTTGCCGAGATACCCGGCCTCAGGACCCTAAGCTTCACCAACAACACCTTCACGGGCCCAATCCCTGATTTCACCAGGCTCGGCGCCATCAAGGCCCTCTTGCTCTCCTACAACAAATTCTCCGGGACCATCCCTTCCGACTTCTTCTCCAAATTAGCTTCCCTCAAGAAAATTTGGATCGATTCGAATGACTTCTCAGGCCCGATACCTGAATCTTTGATGGAGCTTGAGCTTCTCAAAGAGCTTCACATCGAGAACAACCACTTCTCCGGGAGGATACCCACCGTCAAGGAAGATTTGCTCTCCTTCGACGCTTCAAATAACAACCTCGAAGGTCCTATACCGGAATCGCTCGCTAAGTTCGGTGAGAACGCGTTTGCCGGTAGTGGCAACGAGAAGCTTTGCGGGAAGCCATTGAAGAGAAGCTGCGATGGTAACATCTTGCCCTCGTCTTCTCCGGACAAGAACCAAGGGTCGGGGTCGGGTTCCGGGTCCGGGTGGGGATTTAGGATGATTCTGTTTCTGTTCTTGGCTGCGGTGGTGGCGTTTCTCTTCGTGTTCGTGAAGTCGCGGCGGAAGAGCGATGATCATGAGTTCGGGTTGATGGGGAGAATAAACAGAACGGACACAATGGTGGACATTCACGTGGCGAGCTCGAACGGTTACAGAGCGCCGGAGAGCGAGGGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGTGGCGAAGAGAGGGGTGGGCGGCGGAGGGGAGTCGAACAGGGGGGCTCGGACGAGGGGAGGGGGAATGACGGACCTTGTAATGGTGAACGACGAGAGAGGGGTGTTTGGGTTGCAGGATTTGATGAAGGCATCGGCGGAGGTGCTGGGGAATGGGGGGCTGGGGTCAGCGTACAAGGCGGCGATGACGAACGGGCTGTCGGTGGTGGTGAAGAGGATGAGGGATATGAACAAAATGGGAAGGGATGTGTTTGATGCTGAGATGAGGCAGTTTGGGAGGATGAGGCATAAGAATATATTGGGGCCTCTCGCTTACCATTACCGTAGGGAGGAGAAGCTCTTCGTTACTGAGTACATGCCCAAAGGCAGCTTGCTCTACGTCTTGCATGGTGACAGAGGAACAGCCCATGCAGAGTTGAACTGGCCAACCAGGTTAAAGATTGTGAAGGGAATAGCGAGAGGGTTGTCATACCTTTACACTCAATTTTCCACCTATGACCTTCCCCATGGAAACCTCAAGTCCAGCAATGTCCTCCTAAGTGATGACTATGAGCCTCTCTTAGGTGACTTTGGATTCCACCCTCTCATCAACCCCACCTCCGCCGTTCAAGCAATGTTCGCCTACAAATCTCCGGACTATATCCAGTACCAAAAGCTTTCTCAGAAGACCGACGTCTACTGCCTCGGAGTCATCATCCTCGAGATCATTACCGGCAAGTTCCCTTCCCAGTATCATAGCAATGGAAAGGGTGGCACTGATGTTGTTCAACGGGTAGCCACAGCGATTTCGGAGTCGAGGGAAGCAGAAGTCATTGATCCAGAATTGCAAGGGAACATGGGATCGCAGAGCCAGATGTTGCTGCTTATCCACATTGGTGCTGATTGCACTGAGAGCAATCCTGACCAAAGACTTAGCATGAAGGAAGCCGTTAGAAGGATAGAGGAGGTTCAAGTGTGA 1950 0.5395 MAAVRSNNHNRHVICMFLFIAVSLYNLPLSLSGDTEALLKLKQSLTNADRVLDTWVPNALPCSWLGVVCFNGMVTGLRLSDMGLSGTINIDALAEIPGLRTLSFTNNTFTGPIPDFTRLGAIKALLLSYNKFSGTIPSDFFSKLASLKKIWIDSNDFSGPIPESLMELELLKELHIENNHFSGRIPTVKEDLLSFDASNNNLEGPIPESLAKFGENAFAGSGNEKLCGKPLKRSCDGNILPSSSPDKNQGSGSGSGSGWGFRMILFLFLAAVVAFLFVFVKSRRKSDDHEFGLMGRINRTDTMVDIHVASSNGYRAPESEGAAAAAAAAAGVAKRGVGGGGESNRGARTRGGGMTDLVMVNDERGVFGLQDLMKASAEVLGNGGLGSAYKAAMTNGLSVVVKRMRDMNKMGRDVFDAEMRQFGRMRHKNILGPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTAHAELNWPTRLKIVKGIARGLSYLYTQFSTYDLPHGNLKSSNVLLSDDYEPLLGDFGFHPLINPTSAVQAMFAYKSPDYIQYQKLSQKTDVYCLGVIILEIITGKFPSQYHSNGKGGTDVVQRVATAISESREAEVIDPELQGNMGSQSQMLLLIHIGADCTESNPDQRLSMKEAVRRIEEVQV 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211509g00006 649 Pfam Protein kinase domain 378 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211509g00006 649 Coils Coil 637 649 - -
Stsc211509g00006 649 CDD STKc_IRAK 380 646 - -
Stsc211509g00006 649 Gene3D Ribonuclease Inhibitor 33 140 IPR032675 -
Stsc211509g00006 649 SUPERFAMILY L domain-like 47 213 - -
Stsc211509g00006 649 ProSiteProfiles Protein kinase domain profile. 374 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211509g00006 649 Gene3D Ribonuclease Inhibitor 141 244 IPR032675 -
Stsc211509g00006 649 FunFam Nuclear pore complex protein NUP107 31 187 - -
Stsc211509g00006 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 648 IPR046959 -
Stsc211509g00006 649 SUPERFAMILY Protein kinase-like (PK-like) 378 644 IPR011009 -
Stsc211509g00006 649 Gene3D Phosphorylase Kinase; domain 1 343 449 - -
Stsc211509g00006 649 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Stsc211509g00006 649 Gene3D Transferase(Phosphotransferase) domain 1 450 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211509g00006 Stsc-Chr211509 34980 37140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211509g00006 14 649 Receptor kinase-like Gene Family AT3G42880 48.137 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc211509g00006 Pkinase 2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211509g00006 - - gmx:100790660 757.288