Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211508g00016 ATGATGGGTACTCGAATATTCACATACTCGGAATTGGCGCGTGCAACGGATGGGTTCTCGGAATCCAAGTTGGTTGGAGAAGGTGGGTTCGGCTATGTCCACAAAGGGGTTCTTCCCAACGGCATGGAGGTTGCCATCAAACAGCTAAAGGGTGGAAGTAGGCAGGGAGAGCGTGAATTCCAAGCTGAAGTAGATATTATCAGTAGGATTCATCATCGCCATCTCGTTTCTTTGCTTGGATATTCCATCCTTGGCCCCCACAGGCTTCTCGTCTATGAATTTCTACCAAACAATACCTTAGACTTCCATCTACATGCAGGGCAAGGTCCTCGAATAGATTGGCCTGCAAGATTGAGGATTGCTGTAGGAGCAGCAAAAGGATTAGCCTATCTTCATGAGGAATGTTATCCGAAGGTCATCCATCGTGATATAAAGGCCTCTAACATTCTCCTCGATTTTAAATTTGAAGCAAAGGTGGCTGATTTTGGGCTTGCCAAATTCTGTCCTGATATAAATACTCATGTTTCCACACGAGTGATGGGAACTTTAGGGTATGTAGCTCCTGAATATGCTTCAAGTGGAAAACTAACAGAGAAAGCCGACGTTTTCTCCTTCGGAGTGATGCTTCTGGAGCTAATTACTGGCCGCCGACCAATAACATTTGATTCACCTCATACTTCCACAGTTAGTTTGGTACATTGGGCAATGCCTTTGCTAACACAGGTTTTGAAGGATAGTAATTTTGATGCTGTGGTTGACCAAAAACTCCAAAATCAATATGAACCAACTCAAATGGCTTCCATGCTGGCCTCTGCAGCTGCTTCTATACGATATGAACCAAACCTTCGACCAAAGATGAGCCAAATAGTTCGAGCTTTGGAAGGAGATGCATCTCAAGTAGCTGAGTTTATCTCAGTGTGCTTAGATCTTGATCAGGCTGCGTACAAACGAGACATGATCAAAATCATTAGTGACATGAGTGGATCCACAAGCTAA 996 0.4418 MMGTRIFTYSELARATDGFSESKLVGEGGFGYVHKGVLPNGMEVAIKQLKGGSRQGEREFQAEVDIISRIHHRHLVSLLGYSILGPHRLLVYEFLPNNTLDFHLHAGQGPRIDWPARLRIAVGAAKGLAYLHEECYPKVIHRDIKASNILLDFKFEAKVADFGLAKFCPDINTHVSTRVMGTLGYVAPEYASSGKLTEKADVFSFGVMLLELITGRRPITFDSPHTSTVSLVHWAMPLLTQVLKDSNFDAVVDQKLQNQYEPTQMASMLASAAASIRYEPNLRPKMSQIVRALEGDASQVAEFISVCLDLDQAAYKRDMIKIISDMSGSTS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211508g00016 331 SMART serkin_6 19 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211508g00016 331 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Stsc211508g00016 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Stsc211508g00016 331 Pfam Protein tyrosine and serine/threonine kinase 22 293 IPR001245 GO:0004672|GO:0006468
Stsc211508g00016 331 SUPERFAMILY Protein kinase-like (PK-like) 4 293 IPR011009 -
Stsc211508g00016 331 PIRSF ILK 254 311 - -
Stsc211508g00016 331 PIRSF ILK 8 233 - -
Stsc211508g00016 331 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 5 319 IPR047117 -
Stsc211508g00016 331 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Stsc211508g00016 331 FunFam proline-rich receptor-like protein kinase PERK8 95 305 - -
Stsc211508g00016 331 ProSiteProfiles Protein kinase domain profile. 19 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211508g00016 331 Gene3D Transferase(Phosphotransferase) domain 1 95 307 - -
Stsc211508g00016 331 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 2 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211508g00016 Stsc-Chr211508 135997 139954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211508g00016 2 296 Trihelix Transcription Factor Family AT4G32710 66.107 3.78e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc211508g00016 PK_Tyr_Ser-Thr 6.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211508g00016 - - ahf:112743291 513.457