Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211508g00008 ATGGATTCCGATTATGCATTTCTAGAATCTGTTCAACAATACCTTCTTGGAAATGATTCCAACAACATGGTTGATCTTTTAGACCTTAACACCCTCCAATCTTCCTCTCACAAGCCCTCACCTAACCCTAAATTTCATAACAACAATTCGGATAGTACATTACACGCGCCTCCGACGTGGAAGCGCTATAGAGGCGTGAGGCGGCGGCCGTGGGGGAAGTTCGCCGCAGAGATAAGGGATCCGAAGAAGAACGGAGCTAGGATTTGGCTCGGAACTTATCAGACTGAAGAAGAAGCTGCTTTGGCATACGATAAAGCTGCTTTCAAATTGCGCGGTCAAAAAGCTAAGCTCAATTTTCCTCATCTTATTGCTGCCTCTGATTTTGAAAATTTATCATTAGAAACAATGGAGCCAATGATAGAGATCACAACTTGTAAGGAGAATTTCTCAGATTCATCATCATCACCAACACTTGCAGGGTCAAAGAGGAAGAGGAACGTAACTCATTTGCTTAATCAATTAGCCAAAAATAAGAGCCAATCCGAAGTATATATAGGAGGAAATTAA 567 0.4198 MDSDYAFLESVQQYLLGNDSNNMVDLLDLNTLQSSSHKPSPNPKFHNNNSDSTLHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYQTEEEAALAYDKAAFKLRGQKAKLNFPHLIAASDFENLSLETMEPMIEITTCKENFSDSSSSPTLAGSKRKRNVTHLLNQLAKNKSQSEVYIGGN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211508g00008 188 CDD AP2 61 122 IPR001471 GO:0003700|GO:0006355
Stsc211508g00008 188 MobiDBLite consensus disorder prediction 32 56 - -
Stsc211508g00008 188 MobiDBLite consensus disorder prediction 32 59 - -
Stsc211508g00008 188 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Stsc211508g00008 188 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Stsc211508g00008 188 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Stsc211508g00008 188 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Stsc211508g00008 188 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Stsc211508g00008 188 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Stsc211508g00008 188 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Stsc211508g00008 188 PANTHER DNA-BINDING DOMAIN 46 163 IPR044808 GO:0003700|GO:0009873
Stsc211508g00008 188 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211508g00008 Stsc-Chr211508 47349 47915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211508g00008 62 133 AP2-EREBP Transcription Factor Family AT2G44840 75.000 9.83e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211508g00008 AP2 5.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211508g00008 K09286 - gmx:548037 207.223