Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211508g00007 ATGGCTTCTATCACCACCATGGATTCATCAGAATCAGCATACTTGGAATACATTCAACAATACCTTCTTGAGAATGATTCAAACATTCTTATTAACGATCTCAAAATGGATGATTCTAAACCATCTCAAGCTGTTTCAAACCCTAATTGTGATAGCACTTCAGATACAACTTCTCAAGGTGAGAGCCCTACCAACAACACCTCGGCCGGGCGTGAAGTGCACGCGCCTCCAACATGGAAGCGTTATCGGGGTGTCAGGCGCAGGCCGTGGGGTAAGTTTGCGGCGGAGATCAGGGATCCCAAAAAAAATGGTGCTAGGGTTTGGCTCGGGACTTATGAGACTGAAGAGGAAGCAGCTATAGCTTATGACAAAGCTGCATTCAAAATGCGCGGCCGAAAAGCTAAATTGAATTTCCCTCATCTCATTGGCTCAGACGATAAATCTATTTCATTGTCTGAACCAGTGAAGGTGTTAACTATGAAACGAAATTCTCCAGAGCCATCGTCACCTTCATCGGAGGATGATTCAAACTCGTTAGGATCAAAGAGAAGAAGGAATCTAGCGAATTTATTGAATAAATTAGCCAAGAATAGAAACCAAGCTAATAAGGTGGTTAAAATGGATCCGGAGGCAAATGTTGTTGATGGTTGGTTGAACGACGAATTCAATATGATTCTAGTTTAA 684 0.4254 MASITTMDSSESAYLEYIQQYLLENDSNILINDLKMDDSKPSQAVSNPNCDSTSDTTSQGESPTNNTSAGREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAAIAYDKAAFKMRGRKAKLNFPHLIGSDDKSISLSEPVKVLTMKRNSPEPSSPSSEDDSNSLGSKRRRNLANLLNKLAKNRNQANKVVKMDPEANVVDGWLNDEFNMILV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211508g00007 227 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Stsc211508g00007 227 PANTHER DNA-BINDING DOMAIN 49 198 IPR044808 GO:0003700|GO:0009873
Stsc211508g00007 227 MobiDBLite consensus disorder prediction 162 176 - -
Stsc211508g00007 227 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Stsc211508g00007 227 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Stsc211508g00007 227 PRINTS Ethylene responsive element binding protein signature 121 141 IPR001471 GO:0003700|GO:0006355
Stsc211508g00007 227 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Stsc211508g00007 227 Coils Coil 184 204 - -
Stsc211508g00007 227 MobiDBLite consensus disorder prediction 39 80 - -
Stsc211508g00007 227 FunFam Ethylene-responsive transcription factor 2 80 140 - -
Stsc211508g00007 227 MobiDBLite consensus disorder prediction 160 182 - -
Stsc211508g00007 227 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Stsc211508g00007 227 MobiDBLite consensus disorder prediction 39 72 - -
Stsc211508g00007 227 CDD AP2 80 141 IPR001471 GO:0003700|GO:0006355
Stsc211508g00007 227 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211508g00007 Stsc-Chr211508 38725 39408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211508g00007 27 168 AP2-EREBP Transcription Factor Family AT2G44840 53.205 4.23e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211508g00007 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211508g00007 K09286 - gmx:102663872 194.126