Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211508g00003 ATGGAGCTTGAAGCAATTATAAAGGAACAAGTTGATCTGGAGAACATTCCTATAGAGGAAGTCTTTGAAAATCTAAAATGCACAAAGGAAGGACTGACCACTGAGCAAGTGAAAGAGAGGCTAGACTTGTTTGGACACAACAAGCTTGAAGAAAAGAAGGAAAGTAAAATACTCAAGTTTTTGGGGTTTATGTGGAATCCATTGTCATGGGTCATGGAAGCTGCTGCTATCATGGCCATTGCCATGGCACATGGAGGGGGAGAAGGTTGGGATTATCAAGATTTTACCGGCATTGTTATACTGCTACTTGTAAACTCTACAATCAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCAGCTGCACTCATGGCAAGATTGGCCCCAAAAGCAAAGGTACTCCGTGATGGAAAATGGAGCGAAGAAGACGCAGCAGTGTTGGTTCCTGGAGACATAATCAGCATCAAGCTAGGTGACATCATTCCTGCCGATGCGCGTCTCCTTGAAGGAGATCCTTTGAAGATCGATCAGTCTGCTCTTACTGGAGAGTCACTTCCAGTTTCAAAACATCCTGGAGATGGAGTGTATTCTGGTTCAACATGCAAGCAAGGAGAAATTGAAGCAGTAGTGATTGCAACCGGAGTTCACACATTCTTCGGAAAGGCAGCGCATCTTGTGGAAAACACCACACATGTTGGACATTTCCAGAAGGTTTTGCAATCTATTGGGAACTTCTGCATCTGCTCCATTGCTATTGGGATGCTCATTGAAATCATAGTTATATATGGCCCGCAGGGAAGGGAGTATCGAGTTGGTATCGATAACCTCCTTGTGTTACTGATTGGGGGTATCCCTATTGCAATGCCAACTGTCCTTTCAGTTACAATGGCTATTGGTTCACACAAATTATCTCAGCAGGGTGCTATAACAAAGAGAATGACTGCAATAGAAGAAATGGCAGGAATGGATGTCCTATGCAGTGATAAAACAGGCACATTAACTCTCAACAAGCTTACAGTGGACAAGAATCTGATTGAGGTCTTTGCTGATGGAGTTAGTCAGGACATGGTTGTACTTATGGCTGCAAGGGCATCAAGGCTAGAGAACCAAGATGCAATTGATTGTGCAATTGTATCTATGTTAGCAGACCCAAAAGAGGCACGAGCTGGAATAACCGAAATTCACTTCCTTCCATTCAATCCAACAGATAAAAGAACTGCTCTTACATACACCGATGCTGCTGGTAAGATGCATAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAACCTTGCACATAACAAGTCAGAAATTGCACAGAAAGTACATACAATTATAGACAAATTTGCTGAACGTGGCCTTCGCTCACTAGGTGTTGCTTGCCAGGAAGTACCTCAGGGAACCAAAGAAAGTGCAGGGGGTCCATGGGAATTTGTTGGCCTACTCCCTCTATTTGATCCTCCCCGCCACGATAGCGCTGAAACAATCAGAAGAGCTCTTGATCTTGGTGTGAGTGTCAAGATGATCACTGGTGATCAGCTTGCAATTGCTAAGGAAACAGGAAGGCGTCTTGGAATGGGCTCTAACATGTATCCTTCTTCGTCACTGCTAGGAGAAAGCAAAGAAAACTTTGCTTCTGTTCCCGTTGATGATCTTATAGAGAATGCAGATGGTTTCGCTGGTGTCTTTCCTGAGCACAAATATGAGATTGTGAAGAGATTACAAGCTAGAAAGCACATTTGCGGGATGACTGGTGATGGAGTGAATGATGCACCAGCTTTGAAGATAGCCGACATAGGTATCGCTGTAGCAGATGCCACAGACGCTGCAAGAAGTGCCTCTGACATAGTTCTAACCGAACCTGGGTTGAGTGTGATCATAAGTGCTGTTTTAACTAGCCGTGCAATTTTCCAAAGAATGAAAAACTACACAATATATGCTGTATCTATCACCATCCGTATTGTGGTTGGCTTTATGTTACTCACATGCATTTGGGAATTTAACTTCCCTCCCTTTATGGTTCTTGTCATAGCCATTCTCAACGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAGCCTTCTCCAAGTCCTGATAGTTGGAAGCTTAGTGAGATTTTTGCAACTGGGATTGTCCTAGGAGGCTATCTGGCTATAATGACAGTGATATTCTTCTGGGCAGCATATAAAACACACTTTTTTCCTGACTGTTTCCATGTGAGACATCTCCATTTAAATCTGCAAGGTCCACCTACTCATGAAGAGAGTAAAATGCTAGGAGCTGCTATATATCTTCAAGTCAGTATAATTAGTCAAGCCTTAATTTTTGTGACTCGCTCAAGGGGATGGTCATACACTGAAAGGCCTGGTGTTTTGCTTATGATCGCTTTTATTATAGCTCAACTGATTGCTACTATTGTATCTGCCCTTCTCTCTTGGGAGCTAGCAGGAATCAAAGCCATAGGATGGGGATGGACTGGTATCATCTGGGTCTACTCTATTATAACTTACTTATTTTTGGATCCTATAAAGTTTGCTGTTCGTTATGCATTAAGTGGAAGAGCTTGGAATTTGGTGGTAGACAAACATACTGCATTTATCAACAAAAATGACTTTGGTAGAGAAGCTCGTGAAGCACAATGGGCTGCTGAGCAGAGAACCTTACATGGTCTCCAGTCTGCTGACATGAAAGTTGATAAGCATCCTTTCAGGGAAATAAATACACTAGCTGATGAGGCCAAGAGGCGTGCAGAAATAGCAAGGATGAGAGAGCTTCTCACTCTGAAAGATAGAGTGGAAACAATAGGCAGGCGAAAGGGTTTAGATGTGGAAGCAATCAACAGTAATTACACAGTATAA 2862 0.428 MELEAIIKEQVDLENIPIEEVFENLKCTKEGLTTEQVKERLDLFGHNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGGEGWDYQDFTGIVILLLVNSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVSKHPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQKVLQSIGNFCICSIAIGMLIEIIVIYGPQGREYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFADGVSQDMVVLMAARASRLENQDAIDCAIVSMLADPKEARAGITEIHFLPFNPTDKRTALTYTDAAGKMHRVSKGAPEQILNLAHNKSEIAQKVHTIIDKFAERGLRSLGVACQEVPQGTKESAGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIAKETGRRLGMGSNMYPSSSLLGESKENFASVPVDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVVGFMLLTCIWEFNFPPFMVLVIAILNDGTIMTISKDRVKPSPSPDSWKLSEIFATGIVLGGYLAIMTVIFFWAAYKTHFFPDCFHVRHLHLNLQGPPTHEESKMLGAAIYLQVSIISQALIFVTRSRGWSYTERPGVLLMIAFIIAQLIATIVSALLSWELAGIKAIGWGWTGIIWVYSIITYLFLDPIKFAVRYALSGRAWNLVVDKHTAFINKNDFGREAREAQWAAEQRTLHGLQSADMKVDKHPFREINTLADEAKRRAEIARMRELLTLKDRVETIGRRKGLDVEAINSNYTV 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211508g00003 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 852 IPR023298 -
Stsc211508g00003 953 CDD P-type_ATPase_H 31 846 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc211508g00003 953 FunFam Plasma membrane ATPase 338 485 - -
Stsc211508g00003 953 PRINTS H+-transporting ATPase (proton pump) signature 556 572 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211508g00003 953 PRINTS H+-transporting ATPase (proton pump) signature 584 600 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211508g00003 953 PRINTS H+-transporting ATPase (proton pump) signature 765 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211508g00003 953 PRINTS H+-transporting ATPase (proton pump) signature 615 640 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211508g00003 953 PRINTS H+-transporting ATPase (proton pump) signature 442 460 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211508g00003 953 SUPERFAMILY HAD-like 322 631 IPR036412 -
Stsc211508g00003 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 328 334 IPR018303 -
Stsc211508g00003 953 SFLD p-type atpase 308 635 IPR044492 -
Stsc211508g00003 953 Pfam Cation transporter/ATPase, N-terminus 15 78 IPR004014 -
Stsc211508g00003 953 Pfam E1-E2 ATPase 127 305 - -
Stsc211508g00003 953 SFLD C1.7: P-type atpase like 308 635 - -
Stsc211508g00003 953 PANTHER CALCIUM-TRANSPORTING ATPASE 14 888 - -
Stsc211508g00003 953 SMART Cation_ATPase_N_a_2 12 84 IPR004014 -
Stsc211508g00003 953 FunFam Plasma membrane ATPase 478 632 - -
Stsc211508g00003 953 FunFam ATPase 4 plasma membrane-type 568 820 - -
Stsc211508g00003 953 Gene3D - 91 820 - -
Stsc211508g00003 953 Gene3D - 338 485 IPR023299 GO:0000166
Stsc211508g00003 953 NCBIfam HAD-IC family P-type ATPase 98 345 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211508g00003 953 NCBIfam HAD-IC family P-type ATPase 559 664 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211508g00003 953 Gene3D - 323 621 IPR023214 -
Stsc211508g00003 953 Pfam haloacid dehalogenase-like hydrolase 322 598 - -
Stsc211508g00003 953 Gene3D - 903 953 - -
Stsc211508g00003 953 PRINTS P-type cation-transporting ATPase superfamily signature 176 190 - -
Stsc211508g00003 953 PRINTS P-type cation-transporting ATPase superfamily signature 502 512 - -
Stsc211508g00003 953 PRINTS P-type cation-transporting ATPase superfamily signature 480 491 - -
Stsc211508g00003 953 PRINTS P-type cation-transporting ATPase superfamily signature 584 603 - -
Stsc211508g00003 953 PRINTS P-type cation-transporting ATPase superfamily signature 607 619 - -
Stsc211508g00003 953 PRINTS P-type cation-transporting ATPase superfamily signature 326 340 - -
Stsc211508g00003 953 FunFam Plasma membrane ATPase 129 213 - -
Stsc211508g00003 953 NCBIfam plasma-membrane proton-efflux P-type ATPase 31 810 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc211508g00003 953 SUPERFAMILY Calcium ATPase, transduction domain A 129 226 IPR008250 -
Stsc211508g00003 953 Gene3D - 129 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211508g00003 Stsc-Chr211508 13318 20411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211508g00003 3 953 Primary Pumps ATPases AT5G62670 79.036 0.0 1518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211508g00003 K01535 - gmx:100794938 1577.38