Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211507g00021 ATGCACCTTGGAATTCATGATGATCATTTTCTCCTCCAACCGATTTTCACACGTTATGTATCTGCTTCGCTGAACCTAATCTTGTTAATTGTGTTGGTTGTGTCATGGATTTGGGAGAAAGTTCATGTGAATGTGAACCATAGGAAAAACAGTGAAAGAATTCGATTGGGAAGTACTGTTAATGATAATGGCGCTGGATTCTTGTTCTTCAAACAAGGTCCAATTTGCAGCTTAGCTATTTGTGTGTTCAACCTTGTGCTGTGCTTACTAAGCTACTTTTACTCGTATAAAAATGGTGATGGTTCCTCAAACGAAGTTGTTGTTACGATTGCTGATTTTGCTATTAGATCACTTGCTTGGGCTGTTGTTTGTGGTAATTTGCAATTTGGAAGCACTGATTCTCGGGGACCCTGCTTCTCAAGTTTTTTCTTGAGAATTTGTTGCTGCGTGTATGCTGTTGCTTCCTTTTGTTGCATAGTAATAGACTTTATAATCTATGAAAGACAAGCTTCCTTGCCAATTATGTACCTTGTTTCCGATATAAGTGCCTTTGTTAGTGCTTTATTTCTTTGTTATTTGGGGTTTTCCGGAAACCATGTTGTTAAGAATGCCCCTCTCGAAGAAGCCCTTTTGAATGATGACTCTTTGCTGAGGAACAGTTCTAATCACAATGGAAATTCGTCGAGTTATTGTGATGCTGGCTTCTTTAGTTTTGTTACATTCTCTTGGTTGAGTCCATTGATATCTCTAGGCAATAAGAAGGCTTTAGATCTCAAGGATCTTCCTGTTCTTGGTATCAATGATAGTGCCTATGGGGCTTTTCCGAAACTTAGAGACAACCTCGAGTCACAGTGTGGGGGTGATGGGAAAGTAACCACTTTTAAGTTGGTTAAATCATTGTTCTTGTCAACATGGCAGCTGATCTTACTGTCAGCCTTATATGCATTCCTGTACACTTGTGCTTCTTATGTTGGTCCTTATTTGATTGATTTCCTTGTTCAATACCTCAATGGGCAGCAAGATTTTGAAAATGAAGGCTATGTTTTGGTATTGGCATTTGCTGTTGGCAAGTTTGTGGAGTGCCTTTCTCAACGGCACTGGATGTTTAGGTTCCAGCAGATTGGGGTTAGGATACAATCAATGCTGGTCGGGATTATCTATGCTAAAGGTTTGAAGCTTTCATGTAAATCGAAGGATGTTCATAGTAGCGGGGAAATTGTGAACTTGTTGACTGTTGATGCTTCAAGGGTTGGTGAATTTTGCTGGTACATGCATGATCCATGGGTGGCTGTTTTGCAAGTTGCTTTGGCCTTGTTGATTCTCTATAGGAGTGTTGGGCTTGCTTCGATTGCTGCTTTTGTTGCCACTGTAATTGTGATGTTGCTAAACCTGCCTGTGGCGTCATTGCAAGAAAAATACCAAGATAAGTTAATGGAGTTCAAAGACAAAAGAATGAAGTCAACTTCTGAGATCTTAAAGAATATGAGGATTCTAAAACTGCAAGCTTGGGAGATGAAGTTCTTAGAGAAGATCATTCAGCTTAGGAAAGCTGAGGAGATATGGCTAAAGAAATTTGTCATTGGTTCAGTGATTATCAGATTTCTCTTCTTTAATGCCCCAACTTTTGTTGCTGTGGTTACTTTTGGTACATGTGTTCTTATGGGTATACCACTCAAATCAGGGAAGATCTTATCTGCTCTTGCAACTTTCCGAATTCTTCAGATCCCCATATATGCCCTCCCTGACACAATTTCAATGATAGCACAAACTAAGGTCTCACTTGATAGGATCACATCATTTCTTTGTCTAGATGACTTGCAAGCTGATGCAGTGGAGAAAGTTCCATGGGGTAGTTCTGATTTAGCAGTTGAAGTTATAGATGGTAATTTCTCTTGGGATTCCTTTTCCTCTAATACTACTCTGGCAAACATAAATCTCAAAGTTTTTCATGGCATGAGGATTGCTATTTGTGGCACTGTTGGATCTGGTAAATCAAGTTTACTCTCTTGTGTAATTGGTGAATTACCGAAGCTATCCGGAACCATTAAAGTGTGTGGAACAAAGGCTTATGTTTCTCAATCGCCGTGGATACAAAGTGGTAAGATAGAAGATAATATACTATTTGGTAAAGAGATGGACAGGGGAAGGTATGAGAAGGTACTAGAGGCATGTTCCTTAAAAAAAGACCTAGAGGTTCTATCATTTGGTGACCAGACTATTGTTGGTGAGAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGATTACAAATAGCTCGCGCTCTTTACCAAGATGCTGATATATACCTGTTTGATGACCCTTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTTTTTAAGGAGTGTATACTCGGCCTTTTACAAACAAAAACTGTGATATACATTACTCATCAGATAGAGTTTTTACCTGATGCTGACCTAATATTGGTCATGAAAGATGGAAGGATAACTCAGTCAGGAAAATACAATGATATTCTCAAGTCAGGCACTGATTTTATGGAACTTGTAGGGGCACATCAGGAAGCTTTGTCTTCGATTAAATCTTTAGAGAGAAGGACTTCAAGTAAATCTTTAGATAGAAGGCTTTCGAGTAAATCTTTTGAGAGAAGTCTCACGTCTAAGTCATTAGGTCTCACCGTGGAGGACAGTGATTCACTAAGTTCTTTTGGAGAGCAAGACTTGGAAAATTTTGATGGCCAAAATGGTAAATCAGATGAAATGGTTGATGAAAAAGGCCAACTTGTTCAAGATGAAGAACGGGGAAAGGGTAGAGTTGAGTTTAAAGTCTACTGGAAATACATGACAGCAGCATATGGAGGAGTTCTTGTACCCTTCATATTACTTTCACAAATACTTACTGTTGGTTTGACTGTTGCAAGCAATTATTGGATGACTTTGGCAACTCCAGTTTCTGCAACTGTGGAACCTGCTGTTGGAAGTGTTACACTCATTGCTGTCTATGCTGCTTTAGCGATTGGAAGTTCCTTTGGCAACCTTGTCAGAACAATGCTTACTGTGATAGCTGGATATGTGACTGCAACCATGCTCTTCAATAAATTGCATATATGCCTTTTTCGAGCACCAATGTCATTTTTTGATGCTACCCCAAGTGGGCGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCGGTAGATATTAACATTCCAAATCAATTATGGGCAGTTACCTACAATCTTTGTTTCATCTTGGGAAGTATTGCAGTGATGTCTCAAGCTGCATGGCAAGTGTGTATTATATTTATTCCGGTGGTTGCATGTTGCATTTGGTACCAGCAATACTATTCAGCATCGGCGCGGGAACTGGCACGATTAGTTGGTATATGCCAAGCTCCGGTAATACAACATTTTTCTGAAACCATTTCCGGATCTACAACAATAAGAGCTTTTGAGCAAGAATCAAGATTCGGTGACATAAGCATGAAATTGGCAGATAAATATTCCCTGCCAAAGCTGTTTTCTGCTTGTGCAATGGAATGGTTGTGTTTCAGATTGGATATTTTATCCTCTCTCACGTTTGCGTTCTGTTTGATTTTCTTGGTATCTTTTCCAAATGCAATTGCTGTTCCAGGCATTGCGGGGTTGGCTGTGACATACGGGCTCAATTTAAATTCACAAGCGGTTAATGTGATTTGGTTTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATTTTCCAATACACATCCATCCCAAGTGAACCTCCTCTTGTCATAGAAGACAACCGACCTGATCCTTCATGGCCACCATTTGGGGAGGTTCATATCCAAGATCTACAGGTCAAGTATGCTCCGCACTTGCCACTTGTATTACGTGGACTTACGTGCACTTTCGCTGCTGGAACGAAAAATGGCATTGTGGGAAGAACTGGAAGTGGAAAATCAACTCTAGTGCAAACGCTTTTCCGGCTTGTTGAACCAGTTGCTGGAAAAATATTGATTGATAGCATCAACATATCTTCAATTGGAATTCATGATTTAAGGTCCAAACTAAGCATTATTCCACAGGATCCAACAATGTTTGAAGGGACTATAAGAAACAACTTAGATCCACTGGAAGAATACACAGATGAACAAATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGAGAAACTGGACTCCATAGTTACTGAGAATGGAGAGAATTGGAGTATGGGGCAAAGGCAGTTGGTCTGCCTTGGCCGCGTGTTACTAAAGAAAAGCAAGATCTTAGTGCTTGACGAGGCTACAGCATCAGTTGATACAGCCACAGACAATATTATTCAGCAAACAATTAAGCAGAATTTTTCAGATTGCACAGTAATTACAATTGCTCACAGAATAACATCAATCCTCGACAGTGACATGGTTCTGTTTCTTAACCAAGGACTTATTGAGGAGTATGATTCACCACAGAAGTTGCTTAAGAACAAATCTTCTGCTCTTGCTCAACTAGTTGAAGAATACACACGAAGGTCAAACTCTGGTTTTGAAAGTTAA 4551 0.3973 MHLGIHDDHFLLQPIFTRYVSASLNLILLIVLVVSWIWEKVHVNVNHRKNSERIRLGSTVNDNGAGFLFFKQGPICSLAICVFNLVLCLLSYFYSYKNGDGSSNEVVVTIADFAIRSLAWAVVCGNLQFGSTDSRGPCFSSFFLRICCCVYAVASFCCIVIDFIIYERQASLPIMYLVSDISAFVSALFLCYLGFSGNHVVKNAPLEEALLNDDSLLRNSSNHNGNSSSYCDAGFFSFVTFSWLSPLISLGNKKALDLKDLPVLGINDSAYGAFPKLRDNLESQCGGDGKVTTFKLVKSLFLSTWQLILLSALYAFLYTCASYVGPYLIDFLVQYLNGQQDFENEGYVLVLAFAVGKFVECLSQRHWMFRFQQIGVRIQSMLVGIIYAKGLKLSCKSKDVHSSGEIVNLLTVDASRVGEFCWYMHDPWVAVLQVALALLILYRSVGLASIAAFVATVIVMLLNLPVASLQEKYQDKLMEFKDKRMKSTSEILKNMRILKLQAWEMKFLEKIIQLRKAEEIWLKKFVIGSVIIRFLFFNAPTFVAVVTFGTCVLMGIPLKSGKILSALATFRILQIPIYALPDTISMIAQTKVSLDRITSFLCLDDLQADAVEKVPWGSSDLAVEVIDGNFSWDSFSSNTTLANINLKVFHGMRIAICGTVGSGKSSLLSCVIGELPKLSGTIKVCGTKAYVSQSPWIQSGKIEDNILFGKEMDRGRYEKVLEACSLKKDLEVLSFGDQTIVGEKGINLSGGQKQRLQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECILGLLQTKTVIYITHQIEFLPDADLILVMKDGRITQSGKYNDILKSGTDFMELVGAHQEALSSIKSLERRTSSKSLDRRLSSKSFERSLTSKSLGLTVEDSDSLSSFGEQDLENFDGQNGKSDEMVDEKGQLVQDEERGKGRVEFKVYWKYMTAAYGGVLVPFILLSQILTVGLTVASNYWMTLATPVSATVEPAVGSVTLIAVYAALAIGSSFGNLVRTMLTVIAGYVTATMLFNKLHICLFRAPMSFFDATPSGRILNRASTDQSAVDINIPNQLWAVTYNLCFILGSIAVMSQAAWQVCIIFIPVVACCIWYQQYYSASARELARLVGICQAPVIQHFSETISGSTTIRAFEQESRFGDISMKLADKYSLPKLFSACAMEWLCFRLDILSSLTFAFCLIFLVSFPNAIAVPGIAGLAVTYGLNLNSQAVNVIWFLCNLENKIISVERIFQYTSIPSEPPLVIEDNRPDPSWPPFGEVHIQDLQVKYAPHLPLVLRGLTCTFAAGTKNGIVGRTGSGKSTLVQTLFRLVEPVAGKILIDSINISSIGIHDLRSKLSIIPQDPTMFEGTIRNNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTIKQNFSDCTVITIAHRITSILDSDMVLFLNQGLIEEYDSPQKLLKNKSSALAQLVEEYTRRSNSGFES 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211507g00021 1516 Pfam ABC transporter 1288 1435 IPR003439 GO:0005524
Stsc211507g00021 1516 CDD ABCC_MRP_domain1 623 823 - -
Stsc211507g00021 1516 CDD ABCC_MRP_domain2 1268 1488 - -
Stsc211507g00021 1516 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Stsc211507g00021 1516 SUPERFAMILY ABC transporter transmembrane region 299 601 IPR036640 GO:0005524|GO:0016020
Stsc211507g00021 1516 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1270 1504 IPR003439 GO:0005524
Stsc211507g00021 1516 Gene3D ABC transporter type 1, transmembrane domain 288 605 IPR036640 GO:0005524|GO:0016020
Stsc211507g00021 1516 Gene3D ABC transporter type 1, transmembrane domain 914 1251 IPR036640 GO:0005524|GO:0016020
Stsc211507g00021 1516 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Stsc211507g00021 1516 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 846 IPR003439 GO:0005524
Stsc211507g00021 1516 FunFam ABC transporter C family member 3 1253 1505 - -
Stsc211507g00021 1516 FunFam ABC transporter C family member 5 915 1251 - -
Stsc211507g00021 1516 FunFam ABC transporter C family member 10 292 605 - -
Stsc211507g00021 1516 Gene3D - 1253 1506 IPR027417 -
Stsc211507g00021 1516 Gene3D - 607 872 IPR027417 -
Stsc211507g00021 1516 Pfam ABC transporter transmembrane region 309 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211507g00021 1516 Pfam ABC transporter transmembrane region 953 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211507g00021 1516 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Stsc211507g00021 1516 MobiDBLite consensus disorder prediction 892 915 - -
Stsc211507g00021 1516 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1233 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211507g00021 1516 FunFam ABC transporter C family member 5 608 855 - -
Stsc211507g00021 1516 CDD ABC_6TM_ABCC_D2 951 1245 IPR044726 GO:0140359
Stsc211507g00021 1516 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 231 1506 - -
Stsc211507g00021 1516 SMART AAA_5 650 823 IPR003593 GO:0016887
Stsc211507g00021 1516 SMART AAA_5 1296 1481 IPR003593 GO:0016887
Stsc211507g00021 1516 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211507g00021 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 845 IPR027417 -
Stsc211507g00021 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1262 1496 IPR027417 -
Stsc211507g00021 1516 SUPERFAMILY ABC transporter transmembrane region 951 1250 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211507g00021 Stsc-Chr211507 120933 130685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211507g00021 623 863 Calmodulin-binding Proteins AT2G36910 29.885 1.60e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211507g00021 - K05666 gmx:106794105 2154.41