Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211507g00019 ATGGGTGCAAACGGCATTGCGCAATCGCTTATGAGTTTGTTGCCTCATTCTGATGGGATGTTTCTCAAAGTCCTTGTGAAATGCTTGTTGGTCGTGGTTGGTTTTTGTAACACAAGTAGGGCTGTTGTTGCCACTGGTGGTGGGTTAGGTATCGTTGTGAATAAGTTGAATTCTTGCGAGGATGGCGAAATTCGACTGTACTTGTTGGAGATTCTGAGCTTGTTGGCGCTGCGGCGCAATGTTAGGAGCGAAATTGTTCGCCTTGATGCTCTTCATTACGTTGTGGAGGCTGTTAGTGTTGGTAGTATGGTCTCCAGAGAAAGGGCATGCCAAGCAATTGGGATGTTTGGGGTTACAAGAGAAGGTAGGCGAGCTATCGTTGAATTGGGGGCAATATCACCAATTGTGGAGCTATTTCGCTGCGGAGATCACACTACAAAGCTTGTGGCTGGAAATACTCTTGGTGTGATCTCTGCTTATGTTGATTGTATTAGGTCAATTGCTCGAGCTGGGGCTATCCCCCTTTATTTTGAGCTTCTTGAAGGGGGTGATCCTTCTGGTAAGGACATCGCCGAGGACGCATTTTGTGTGTTGGCTGTTGATGAGGCTAATGCCATTGAGATCTTTGGAAACTTAGTAAGGATTTTGAGAGATGGTGGTAATGAGGCGAAGGCTGCTGCTGCTAATGTGGTGTGGGATCTATCTACTTACAGTTACTCAACACCAGTGGTGTGCGATTCAGGTGTGATTCCGATACTAGTTGATCTTTTGGGGAGTAGAAGTAATGAGGTGAAGGAGAATATTTCTGGTACATTTTCTCAGCTGAGCTATGACAGGGAGAATAGAATTGCACTTTCCGATGCTGGGGTGGTTCCAATCTTAATTGACTTGTTGCATGACGATTTGGAGGAACTAAGGGATAATGCAGCTGAGGCACTTGTCAATTTTTATGAAGATCCATTGTACCATGATAGTGTATCTCATATAATTGATGTTCCTTCATTCAGAATCATGCAGAATCGGCTGGTTCATCTTCGCGAATCGAATGAGCGTGCTCCTTTACAAAGAATGGATATTGATCTTCCCTCTTGGAATTCAGATCGAATAACCTAA 1113 0.4447 MGANGIAQSLMSLLPHSDGMFLKVLVKCLLVVVGFCNTSRAVVATGGGLGIVVNKLNSCEDGEIRLYLLEILSLLALRRNVRSEIVRLDALHYVVEAVSVGSMVSRERACQAIGMFGVTREGRRAIVELGAISPIVELFRCGDHTTKLVAGNTLGVISAYVDCIRSIARAGAIPLYFELLEGGDPSGKDIAEDAFCVLAVDEANAIEIFGNLVRILRDGGNEAKAAAANVVWDLSTYSYSTPVVCDSGVIPILVDLLGSRSNEVKENISGTFSQLSYDRENRIALSDAGVVPILIDLLHDDLEELRDNAAEALVNFYEDPLYHDSVSHIIDVPSFRIMQNRLVHLRESNERAPLQRMDIDLPSWNSDRIT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211507g00019 370 Gene3D - 1 159 IPR011989 -
Stsc211507g00019 370 ProSiteProfiles HEAT repeat profile. 290 316 IPR021133 -
Stsc211507g00019 370 SMART arm_5 160 200 IPR000225 GO:0005515
Stsc211507g00019 370 SMART arm_5 278 318 IPR000225 GO:0005515
Stsc211507g00019 370 SMART arm_5 119 159 IPR000225 GO:0005515
Stsc211507g00019 370 SMART arm_5 237 277 IPR000225 GO:0005515
Stsc211507g00019 370 Gene3D - 160 331 IPR011989 -
Stsc211507g00019 370 Pfam Armadillo/beta-catenin-like repeat 279 315 IPR000225 GO:0005515
Stsc211507g00019 370 Pfam Armadillo/beta-catenin-like repeat 242 276 IPR000225 GO:0005515
Stsc211507g00019 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 290 IPR000225 GO:0005515
Stsc211507g00019 370 SUPERFAMILY ARM repeat 4 319 IPR016024 -
Stsc211507g00019 370 Coils Coil 295 315 - -
Stsc211507g00019 370 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 212 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211507g00019 Stsc-Chr211507 116561 118028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211507g00019 123 338 U-box Gene Family AT2G28830 23.661 1.74e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211507g00019 - - gmx:100819735 446.432