Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211507g00012 ATGGATACCATTAGCAACATCTGTGAGTCGAACTCCGACAAAATATGGAACCTAAAGATGCGTCTAATCCGTCTCTGGAAGGTTCCTTCCGTGGTTGACAAAAAATACAAGGCTTCTTTAGAGATTGTGTTCATAGACAGTGAGGGAAGCCGGATAAATGCAATGGTCAGAGCAAATCATATTCGTTTGTTTGAAAATATGCTCCAAGAAGGAAAAGCATATGTTATTTCCAATGTTGCAGTTGCATCAAATGACATCAAGTTCAAACCAACGACACACGCATATCGCCTTATTTTCAAAAAAGAAACAAGGGTTTACCACATAGAGGACAACACCATTCCTCTAGAATCATTTCAGTTTATCCCATCATCAAAGATATTATCAGAAACTCGCGATGATGGTTACCTAATTGGATCGATGACCATATCAAACACGAACTATACAACTACACTCATGATTAACCCTGACATTGAAGCTGCTAAGGCAAGTTATTCTACTGCTGGAATTATAACAGATATTGACACAAAGCTTTCTTGGTGGTATAAAGGGTGCAAACAGTGCTTTCAGGGACTAGAAACACTATCGGATCAATTTTATTGTACCAAATGTGATGAATACTACAATGACTTTACTGCCAGATACTGCATTCGCTTACGCATCGCTGATGCACCAAGAACTGCTTCATTAGTTATCTTTGAGAGTGCCTCTTCAAGTTTCCTTGGCATTTCTGCAAATGACTTAGTAACAAAACTCACCATGAGTGGCGAAGACACTTCAAAGTATCCCGATGTCTTGTACAAGTTCAAGGGAAAGACGTTCATATTCAAAGTCATTGCTACATTGAATCGGTTGAATCATTTCCAACAATGCACAATAACCATAAGCAAAATTACATGTGATGAAGAAATTTTGAGAGCTTATCTTGAAAAATACAACGTAGACTTGGGAGCATTTGCAACCTCCACTGTCTCACCAACAAGGGAGAACTTTGTTGTTGATCTGGCAAAACAAAAAACCCCATCTCCACCAGAGAAGAAAAAAAGCAAAGCCAAGAGAAGCGAAGGCAGCGAATTTAACACGCCTCCAACTAACAAAGAAGGTGAAAGCCCTGCTGACAAGTCAACGGTTTTAAAGTCCTCAACTAAAAAAAACCTCATGAAAGAATTCAATGTTTCCGCAAGAAAAGGATCAAAAAAGTCCATCAAGCTGAACCTGGATTAA 1221 0.389 MDTISNICESNSDKIWNLKMRLIRLWKVPSVVDKKYKASLEIVFIDSEGSRINAMVRANHIRLFENMLQEGKAYVISNVAVASNDIKFKPTTHAYRLIFKKETRVYHIEDNTIPLESFQFIPSSKILSETRDDGYLIGSMTISNTNYTTTLMINPDIEAAKASYSTAGIITDIDTKLSWWYKGCKQCFQGLETLSDQFYCTKCDEYYNDFTARYCIRLRIADAPRTASLVIFESASSSFLGISANDLVTKLTMSGEDTSKYPDVLYKFKGKTFIFKVIATLNRLNHFQQCTITISKITCDEEILRAYLEKYNVDLGAFATSTVSPTRENFVVDLAKQKTPSPPEKKKSKAKRSEGSEFNTPPTNKEGESPADKSTVLKSSTKKNLMKEFNVSARKGSKKSIKLNLD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211507g00012 406 Pfam Replication factor-A C terminal domain 165 297 IPR013955 -
Stsc211507g00012 406 MobiDBLite consensus disorder prediction 387 406 - -
Stsc211507g00012 406 MobiDBLite consensus disorder prediction 355 381 - -
Stsc211507g00012 406 CDD RPA1_DBD_A_like 18 105 - -
Stsc211507g00012 406 Pfam Domain of unknown function DUF223 41 135 IPR003871 -
Stsc211507g00012 406 SUPERFAMILY Nucleic acid-binding proteins 4 110 IPR012340 -
Stsc211507g00012 406 Gene3D - 140 310 IPR012340 -
Stsc211507g00012 406 CDD RPA1_DBD_C 153 298 IPR047192 -
Stsc211507g00012 406 Gene3D - 2 107 IPR012340 -
Stsc211507g00012 406 MobiDBLite consensus disorder prediction 339 354 - -
Stsc211507g00012 406 SUPERFAMILY Nucleic acid-binding proteins 162 299 IPR012340 -
Stsc211507g00012 406 MobiDBLite consensus disorder prediction 388 406 - -
Stsc211507g00012 406 MobiDBLite consensus disorder prediction 336 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211507g00012 Stsc-Chr211507 66936 69860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211507g00012 154 297 Core DNA Replication Machinery Family AT5G61000 24.658 1.44e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211507g00012 - - aip:110268385 270.396