Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211507g00005 ATGGACTCCGCCCAAGCCAAATCTATGACGGAGCTCCGGCAAAGCAGTTCCGGCAACGCCGCCGAATTGCAATCGGAGAATCCGAATCGATCTTTTTCTCAACCTGATGCCTCAGCCACATCCTCCGGCAACGCCGGCGGCGCAAGATACAAGCTGATGTCTCCGGCAAAGCTCCCGATCTCGAGGTCCCCGTGCGTAACGATTCCACCTGGCCTCAGTCCGACGTCATTTCTCGAATCTCCGGTGCTGCTCTCCAACATGAAGGTTGAACCTTCACCCACTACAGGTTCCCTTTCTAAGCTTCACCAAACTGGGCATGGTTCTGTGGCTTCTGCCGCTGTATCTACTACATTTCCTGTAACCACTGTATGCTTCAATACCAATACTGTTGATGACAGAACATCGAGCTTATTTGAGTTCAAAGCACACAATAGATCAAATATGGTTAATGCGGACTTCAACAACCATGTAAATGAAAAATCTAATCAAATAGATGTTCAAGGAAAAGCCCAATGTATCCCTTCGTCACCTTCAGTTAAAAGTGAGATAGCTGTAACTTCAAATGAGTTAAGTCTATCATCACCTGTGCAAATGGTTAGTTCAGGAGCTAGTTCTCATGTTGAAGTCGATATGGATGAATTTAACCATGGGGGAACCGCAGCCAATGGGCTTCAGGCATCACAAGTTGAGGGTAAGGGCAATGGACTTTCAGTTGCATCTGAGAGAGTATCTGATGACGGATACAACTGGAGAAAATATGGGCANNNNNNNNNNCGAAGTTATTACAAATGCACACATCCCAACTGTGATGTGAAGAAACTATTTGAACGTTCCCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAAGTATTATGTCAATGCAAGACGAGAGATCTGATAAGGTTTCTTTTGCTGTTCGAGATGAGAAGGCATCCAATATATATGGCCAGGTCTCTCATACTGCTGAGGCTGGCAGTACTCCAGATCTATCACCCGGAGGAGCAAGTGGTGATAGTCCAGAGGTTGCAGGGGTTACCTCAAATAGGATTAATGATGAGCTTGATGATGATGATCCTTTCTCCAAGCGAAGAAAAATGGAGCTTGGAAGTGCTGATATTACTCCTGTAGTTAAGCCCATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGGTACCGTTGGCGTAAGTATGGGCAGAAGGTGGTCAGAGGCAATCCAAATCCTAGGAGTTATTATAAATGCACAAATGCTGGTTGCCCTGTTAGAAAGCATGTGGAGCGAGCATCTCATGATCCAAAAGCAGTAATAACCACATATGAAGGTAAGCACAACCATGATGTACCAACTGCAAAGAATAGTAGCCATGACATGGCAGGACAAGCTGCATCCATTGGACAAGCAAGAATTAGGTCAGAAGAAAGTGATACGATTAGCCTTGATCTAGGGATGGCCATTAACCAAGGTGCTGAAAATGGCTCAAACAGGCAAGGGAGACTGCCACTTTCTGAATTTGGAGGCAGTCAAACTCACACAAACGATTCCAATTTCAAGTTTGTCCATGCTGCCTCAGCTCCAGTATACTATGGTGTTCTAAATAACGGCTCCATTCCATATGGTTCTAGAGAAAATCTGAGTGATAGTACATCTTTAAACCACTCTACTTATCCCTGCCCAAAGAACATGGGAAGAATACTAACGGGTCCCTAG 1782 0.4495 MDSAQAKSMTELRQSSSGNAAELQSENPNRSFSQPDASATSSGNAGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSKLHQTGHGSVASAAVSTTFPVTTVCFNTNTVDDRTSSLFEFKAHNRSNMVNADFNNHVNEKSNQIDVQGKAQCIPSSPSVKSEIAVTSNELSLSSPVQMVSSGASSHVEVDMDEFNHGGTAANGLQASQVEGKGNGLSVASERVSDDGYNWRKYGXXXXRSYYKCTHPNCDVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGSIMSMQDERSDKVSFAVRDEKASNIYGQVSHTAEAGSTPDLSPGGASGDSPEVAGVTSNRINDELDDDDPFSKRRKMELGSADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKNSSHDMAGQAASIGQARIRSEESDTISLDLGMAINQGAENGSNRQGRLPLSEFGGSQTHTNDSNFKFVHAASAPVYYGVLNNGSIPYGSRENLSDSTSLNHSTYPCPKNMGRILTGP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211507g00005 593 MobiDBLite consensus disorder prediction 1 47 - -
Stsc211507g00005 593 MobiDBLite consensus disorder prediction 367 383 - -
Stsc211507g00005 593 MobiDBLite consensus disorder prediction 332 383 - -
Stsc211507g00005 593 MobiDBLite consensus disorder prediction 513 538 - -
Stsc211507g00005 593 SUPERFAMILY WRKY DNA-binding domain 241 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 ProSiteProfiles WRKY domain profile. 408 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 Gene3D WRKY domain 236 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 Gene3D WRKY domain 398 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 ProSiteProfiles WRKY domain profile. 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 508 IPR044810 GO:0003700
Stsc211507g00005 593 SUPERFAMILY WRKY DNA-binding domain 405 473 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 MobiDBLite consensus disorder prediction 1 50 - -
Stsc211507g00005 593 FunFam WRKY transcription factor 33 400 466 - -
Stsc211507g00005 593 Pfam WRKY DNA -binding domain 414 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 Pfam WRKY DNA -binding domain 245 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 SMART WRKY_cls 413 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00005 593 SMART WRKY_cls 244 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211507g00005 Stsc-Chr211507 21192 26901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211507g00005 53 593 WRKY Transcription Factor Family AT4G26640 54.595 3.70e-178 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc211507g00005 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211507g00005 - - adu:107464084 1074.69