Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211507g00004 ATGGTTAATGCGGACTTCAACAACCATGTAAATGAAAAATCTAATCAAATAGATGTTCAAGGAAAAGCCCAATGTATCCCTTCGTCACCTTCAGTTAAAAGTGAGATAGCTGTAACTTCAAATGAGTTAAGTCTATCATCACCTGTGCAAATGGTTAGTTCAGGAGCTAGTTCTCATGTTGAAGTCGATATGGATGAATTTAACCATGGGGGAACCGCAGCCAATGGGCTTCAGGCATCACAAGTTGAGGGTAAGGGCAATGGACTTTCAGTTGCATCTGAGAGAGTATCTGATGACGGATACAACTGGAGAAAATATGGGCANNNNNNNNNNCGAAGTTATTACAAATGCACACATCCCAACTGTGATGTGAAGAAACTATTTGAACGTTCCCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAAGTATTATGTCAATGCAAGACGAGAGATCTGATAAGGTTTCTTTTGCTGTTCGAGATGAGAAGGCATCCAATATATATGGCCAGGTCTCTCATACTGCTGAGGCTGGCAGTACTCCAGATCTATCACCCGGAGGAGCAAGTGGTGATAGTCCAGAGGTTGCAGGGGTTACCTCAAATAGGATTAATGATGAGCTTGATGATGATGATCCTTTCTCCAAGCGAAGAAAAATGGAGCTTGGAAGTGCTGATATTACTCCTGTAGTTAAGCCCATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGGTACCGTTGGCGTAAGTATGGGCAGAAGGTGGTCAGAGGCAATCCAAATCCTAGGAGTTATTATAAATGCACAAATGCTGGTTGCCCTGTTAGAAAGCATGTGGAGCGAGCATCTCATGATCCAAAAGCAGTAATAACCACATATGAAGGTAAGCACAACCATGATGTACCAACTGCAAAGAATAGTAGCCATGACATGGCAGGACAAGCTGCATCCATTGGACAAGCAAGAATTAGGTCAGAAGAAAGTGATACGATTAGCCTTGATCTAGGGATGGCCATTAACCAAGGTGCTGAAAATGGCTCAAACAGGCAAGGGAGACTGCCACTTTCTGAATTTGGAGGCAGTCAAACTCACACAAACGATTCCAATTTCAAGTTTGTCCATGCTGCCTCAGCTCCAGTATACTATGGTGTTCTAAATAACGGCTCCATTCCATATGGTTCTAGAGAAAATCTGAGTGATAGTACATCTTTAAACCACTCTACTTATCCCTGCCCAAAGAACATGGGAAGAATACTAACGGGTCCCTAG 1341 0.4288 MVNADFNNHVNEKSNQIDVQGKAQCIPSSPSVKSEIAVTSNELSLSSPVQMVSSGASSHVEVDMDEFNHGGTAANGLQASQVEGKGNGLSVASERVSDDGYNWRKYGXXXXRSYYKCTHPNCDVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGSIMSMQDERSDKVSFAVRDEKASNIYGQVSHTAEAGSTPDLSPGGASGDSPEVAGVTSNRINDELDDDDPFSKRRKMELGSADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKNSSHDMAGQAASIGQARIRSEESDTISLDLGMAINQGAENGSNRQGRLPLSEFGGSQTHTNDSNFKFVHAASAPVYYGVLNNGSIPYGSRENLSDSTSLNHSTYPCPKNMGRILTGP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211507g00004 446 ProSiteProfiles WRKY domain profile. 261 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 MobiDBLite consensus disorder prediction 220 236 - -
Stsc211507g00004 446 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 361 IPR044810 GO:0003700
Stsc211507g00004 446 Gene3D WRKY domain 89 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 Gene3D WRKY domain 251 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 ProSiteProfiles WRKY domain profile. 92 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 MobiDBLite consensus disorder prediction 366 391 - -
Stsc211507g00004 446 MobiDBLite consensus disorder prediction 185 236 - -
Stsc211507g00004 446 SMART WRKY_cls 97 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 SMART WRKY_cls 266 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 FunFam WRKY transcription factor 33 253 319 - -
Stsc211507g00004 446 SUPERFAMILY WRKY DNA-binding domain 258 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 Pfam WRKY DNA -binding domain 98 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 Pfam WRKY DNA -binding domain 267 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc211507g00004 446 SUPERFAMILY WRKY DNA-binding domain 94 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211507g00004 Stsc-Chr211507 21192 26901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211507g00004 17 446 WRKY Transcription Factor Family AT4G26640 54.955 8.89e-147 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc211507g00004 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211507g00004 - - adu:107464084 812.757