Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211507g00001 ATGAGAGATCCTGATACTGGAAATTCCCGCGGTTTTGGCTTTATTAGCTATGATTCATTTGAGGCATCTGATTCTGCCATTGAGGCAATGAACGGGCAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTACAAAAAAGACACTAAAGGGGAAAGGCATGGCACCCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCCACTGCGCAGAAGAGTAGGCCTCATACGAGATTTGCCAGTGCACCTCCAACACTTGCTAATGTTGCTCAGGCTAATGGCACCGTTCCTGCTCCGGTGCCTCCTCATCCCTTTGCTAATGGGATGGCTCCACCACCCATTCCTGCCCTCCGACCACCCCCACCACCCCCTCAAGCAGCAGCATTTCAGCCTATGCCTGGAGCTGGACAACCAGCATGGCATCAACAGCAGCCCGGTCTACCACCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCTGGTATGCCAATGCCGCCACCTCCACAAGCTGTTTTGGCTCCTCCAAGGCCTCTTCCGCCACCAACAGGAATGGTAACCCAACCACCTGTTTGGCGACCACAACCGCCGCCCCCGCAACAAGGTGGACGACCTATGGCTTATCCTCAACCCTCAATGCCTCCACCACCTTCCTATAACCAGATGCCGCCACCTCATTGA 690 0.5391 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVPAPVPPHPFANGMAPPPIPALRPPPPPPQAAAFQPMPGAGQPAWHQQQPGLPPGMPPPQVQQFRPPPSGMPMPPPPQAVLAPPRPLPPPTGMVTQPPVWRPQPPPPQQGGRPMAYPQPSMPPPPSYNQMPPPH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211507g00001 229 MobiDBLite consensus disorder prediction 97 129 - -
Stsc211507g00001 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Stsc211507g00001 229 MobiDBLite consensus disorder prediction 49 80 - -
Stsc211507g00001 229 PRINTS Proline rich extensin signature 68 84 - -
Stsc211507g00001 229 PRINTS Proline rich extensin signature 90 102 - -
Stsc211507g00001 229 PRINTS Proline rich extensin signature 172 197 - -
Stsc211507g00001 229 PRINTS Proline rich extensin signature 115 136 - -
Stsc211507g00001 229 PRINTS Proline rich extensin signature 138 154 - -
Stsc211507g00001 229 MobiDBLite consensus disorder prediction 93 229 - -
Stsc211507g00001 229 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 220 - -
Stsc211507g00001 229 MobiDBLite consensus disorder prediction 145 229 - -
Stsc211507g00001 229 MobiDBLite consensus disorder prediction 64 80 - -
Stsc211507g00001 229 Gene3D - 1 60 IPR012677 -
Stsc211507g00001 229 SUPERFAMILY RNA-binding domain, RBD 1 56 IPR035979 GO:0003676
Stsc211507g00001 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 40 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211507g00001 Stsc-Chr211507 2065 3635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211507g00001 1 62 Eukaryotic Initiation Factors Gene Family AT1G22760 42.188 2.74e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211507g00001 K12831 - gmx:100792707 230.335