Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211506g00016 ATGGAAGTGGTGAGCGGTTTCTCACTGCTTCTGCAGCAATTCACCGCTCTCTTACGGAAGAACCTTCTCCTTTCATGGCGAAACAAGAGGGCGACGCTGCTTCAGGTTCTCTCACCACTCTTCTTCATGTTCCTCATTTTCGCCATTGACAAGGCAATCAAAGCTCAGTACTCAAACACAACTTACTACAAGAGCCTTTCTGAGCCTCCACTTCGCCCTTCCCCTTCCATCCCTCCATGCGAGGACAAGTTCTTCGTCAAGCTCCCTTGCTATGATTTTGTTTGGAGTGGTGATCAAAATCCGAGAATTCGAACCATTGCTCAAGCTATCATGAACAATAACCCTGGCAGGACTATACCTCCCTCTAAGGTGAAATCCTTTAGTGATAAAGCTGCAGTCGATGAGTGGCTTCTGAATAATCCTATGCACTGTCCAGGGGCTTTGCATTTTGTGGAAAGAAGTAATAGCATCATCAGCTATGGTTTACAGACAAATTCCACAGCTGTTCAAAAGAGAGGGAAGTACGAAGACCCCACTTTTGCATTTCAACTCCCACTTCAGCTTGCTGCAGAGCGAGAAATTGCTAGGAGCCTGATTGGAGACTCGAACTTCAGCTGGAATGTCTTTTTGAGGGAATTTGCGCACCCAGCCACGGCACCTTTCTCTGCAGTGGCTTCCATAGGTCCAGCATTTTTCCTTGCGATTGCCATGTTCAATTTTGTTCTTCAGATGACTTCTTTGGTAACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTATGATGGGGCTCTATGACTCTGCTTACTGGTTGTCCTGGCTCATCTGGGAGACAGTCATTACTTTCCTATCATCCCTTCTCGTAGTTCTCTTTGGAATGATGTTTCAGTTTCGTTTCTTCTTGAAAAACAATTTTCTGGTTGTATTCTTTGTGTTCTTCCTATTTGAACTCAATATGACTGGCTTTGCTTTCATGCTATCTGCTTTCATTCGTAAATCGTCTTCAGCAACAACAGTAGGCTTCTTCCTATTTATTATTGGCTTTGTGACTCAGCTTGTTGTACAAGCAGGATTTCCTTATACAGATAGCATTTCGAAGACTTTCCGAACAATTTGGTCTTTCTTTCCACCCAATCCTTTTGCTCAAGCTGTACAAATTCTTTCCGAGGCGGTCTCAACTTCTGGAGATCATGGTATTAGATGGAGTAAACGGGGACAATGCGGTCCTAACGATGACAACTGTGTGATCACAATTAATGGTATTTATCATTGGTTCTTAGCAACATTCGTTTTGTGGTTTGTTCTGGCCATCTACTTCGACAACATAATCCCCAATGCATCTGGCGTGAGGAAATCGATATTATACTTCCTAAATCCGTATTACTGGATGGGAAGAGGAGGCCAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTGCATAGTTTCAGTGCCTCATCAAGAGCCTGTTACACCAGATGATCAAGACGTCCTTGAAGAACAAAATACTGTAAAAAGACAAGTAACAGAAGGTGTGATTGATGCAAATGTTGCGGTTCAGATACGTGGCCTTGCAAAGACGTATCCTGGTGCTTGTAATATTGGTTGTTGCTGTAAATGTAAAAGAACTAAACCTTACAATGCTGTTAAGGATTTATGGGTGAGCTTTGAAAAGGATCAGCTATTTTGTCTTTTAGGACCTAACGGAGCGGGTAAAACAACGGTTATTAATTGTTTGACAGGGATATCTCCAGCAACTGACGGAGATGCATTGATTTATGGACATTCCATCCGTAGCTCCGCTGGCATGTCAAAGATTCAAAAGCTTATAGGAGTATGTCCCCAGTTTGATATCTTGTGGGATTTACTGTCTGGCGAAGAGCATCTTCGACTCTTTGCTACTATCAAAGGCCTAACCCCAAGTTCCATCAACTCAATTACCCAAGAATCACTGGCAGAGGTGAGACTTACTGATTCAGCGAGAGTGAGAGTTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTGAGTGTTGCAATTTCCCTTATTGGTAACCCTAAATTGATCATTTTGGATGAACCAACTACTGGTATGGATCCAATAACAAGGAGGCACGTATGGGACATAATCCAAAATGCTAAAAAAGGTCGTGCCATTGTCCTTACGACACACTCTATGGAAGAAGCTGATATTCTCAGTGACCGAATAGGAATCATGGCAAAGGGAAGGCTTCGCTGCATTGGCACCTCAATCAGATTGAAGTCGCGGTTTGGTACTGGTTTTGTTGCTAATATTAGCTTCCATGGAAACAATGTTGGAAGTGGTACAGACAACAGGGATGCTGTTTCTTCGGCTCATCATGAGGCTGTGAAGCAATTCTTTAAGAATCATTTAGATGTAGTGCCAAAGGAAGAGAACAAGAACTTCATAACTTTTGTGATTCCTCATGACAAGGAGGGGATCCTGGCAGATTTTTTCGCCGAGTTACAAGATAGAGAAGAAGAATTTGGCATATCTGACATCCAGCTTGGTCTGACAACTCTTGAAGAAGTTTTCCTGAATATTGCAAAGCAAGCAGAGCTAGAAAGCGCTGCAGCCGATGGGAGCCTAGTGACTCTGATCTTAACATCTGGGGAGTCTGCGCAGATTCCTATAGGAGCTAGATTTGTTGGAATTCCAGGAACAGAGTCTGAAGAGTACCCAACAGGGGTTATGGTAGAAGTATACTGGGAGCAAGACGAATCTGGTGCTCTATGTATATCTGGTCACTCACAAAAAGTTCCAGTTCCTTCTGGTGTTCAACTATCAGCAAGACAAGGTAGAAATTCGCGCCGGACAGGAACAGTTCACGGGGTTATAATCGATCCCAGCCAAGTTGCTTCTGTCAGGTTTCAGTGA 2892 0.4346 MEVVSGFSLLLQQFTALLRKNLLLSWRNKRATLLQVLSPLFFMFLIFAIDKAIKAQYSNTTYYKSLSEPPLRPSPSIPPCEDKFFVKLPCYDFVWSGDQNPRIRTIAQAIMNNNPGRTIPPSKVKSFSDKAAVDEWLLNNPMHCPGALHFVERSNSIISYGLQTNSTAVQKRGKYEDPTFAFQLPLQLAAEREIARSLIGDSNFSWNVFLREFAHPATAPFSAVASIGPAFFLAIAMFNFVLQMTSLVTEKELKLRQAMTMMGLYDSAYWLSWLIWETVITFLSSLLVVLFGMMFQFRFFLKNNFLVVFFVFFLFELNMTGFAFMLSAFIRKSSSATTVGFFLFIIGFVTQLVVQAGFPYTDSISKTFRTIWSFFPPNPFAQAVQILSEAVSTSGDHGIRWSKRGQCGPNDDNCVITINGIYHWFLATFVLWFVLAIYFDNIIPNASGVRKSILYFLNPYYWMGRGGQKVKEGGVCSCCIVSVPHQEPVTPDDQDVLEEQNTVKRQVTEGVIDANVAVQIRGLAKTYPGACNIGCCCKCKRTKPYNAVKDLWVSFEKDQLFCLLGPNGAGKTTVINCLTGISPATDGDALIYGHSIRSSAGMSKIQKLIGVCPQFDILWDLLSGEEHLRLFATIKGLTPSSINSITQESLAEVRLTDSARVRVGSYSGGMKRRLSVAISLIGNPKLIILDEPTTGMDPITRRHVWDIIQNAKKGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFVANISFHGNNVGSGTDNRDAVSSAHHEAVKQFFKNHLDVVPKEENKNFITFVIPHDKEGILADFFAELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESAAADGSLVTLILTSGESAQIPIGARFVGIPGTESEEYPTGVMVEVYWEQDESGALCISGHSQKVPVPSGVQLSARQGRNSRRTGTVHGVIIDPSQVASVRFQ 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211506g00016 963 Gene3D - 508 766 IPR027417 -
Stsc211506g00016 963 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 484 859 IPR026082 GO:0016020|GO:0055085|GO:0140359
Stsc211506g00016 963 Pfam ABC-2 family transporter protein 31 438 IPR013525 GO:0016020|GO:0140359
Stsc211506g00016 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 746 IPR027417 -
Stsc211506g00016 963 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524|GO:0016887
Stsc211506g00016 963 SMART AAA_5 557 741 IPR003593 GO:0016887
Stsc211506g00016 963 Pfam ABC transporter 549 693 IPR003439 GO:0005524
Stsc211506g00016 963 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 518 764 IPR003439 GO:0005524
Stsc211506g00016 963 FunFam ABC transporter A family member 2 508 771 - -
Stsc211506g00016 963 CDD ABC_subfamily_A 518 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211506g00016 Stsc-Chr211506 118802 125667 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211506g00016 496 763 Calmodulin-binding Proteins AT2G36910 20.073 8.59e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211506g00016 - - gmx:100786538 1528.07