Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211506g00011 ATGAGGAATGAGGCCAACGAACCTGCAAGTTTCTGGACTCAAGCAAACGCTCTCCTCAGGAAGAATTTAACGTACCAGAAGAGGAATGCGAAGACGAACGTGAGGATAATCATGTACCCGTTCTTGCTGTGTCTGCTGCTGCTGCTTCTGCAGAAGCTGGTGGACAACCAGCTGAACAAGGACAAGTACAAGTGCGGGTGCATCTGTACAAAATCAGAGGGTGATCAGTGCCTTGAGAAAGCGTGTGGTGTTGAGTATTCAGATTTGGACCAAGTCGGTGCTTGTGCAATTCCCAACCCTCCTGAATGGCCTCCTGTGCTACAAGTTCCTGACCCTAATTACAGAGCTGTTGCCACTGACTTCATTCCCGACTCTGATCTTCCCAACCGCTCTTGCCGGAGGAACGGCTCTTGCCCTATCACCATGCTCTTCACGGGGAATAACCAATCTTTTGGTCAAATTTTGTACAGGAATATGCTCCCTAGCAACTTTACTATGAATACCTCTAATGTGATGACTAGTTTGGCTAATGATGTTCTGGGATCAGCATCAAAGACAGAAACCACCAATTTTCTTGAATCCGCTTTCTTTTCAGGCCTTCCTGTTTATTATCTACAACAGCAATGCACAAAGAACTCTACATTTTCCTTTCCACTCGAGATAGCATCCTTTAATTTACAGCAAGAGGTAACATGTGCTCAGGTTTTACCTTTGTGGCGTAATAGTCCTTCTGAAGTGAACAATGAACTATATAAAGGCTATCGAAGAGGGAACCCTGAGAAACAGATCAATGAGATAGCTGCAGGTTATGATTTTCTAAATTCCAATCACAATATATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACTGGCTTTGGTCCTATTGGATTGGCAAGGGTCCCTCGTTCAATAAATCTGGTGTCAAATGCCTACCTTCAATATTTGATGGGTCCTAATACCAAAATGTTGTTTGAGTTTGTGAAGGAAATGCCAAAACCTGAAACCAAAGTCTCCTTTGATTTGGCTTCTCTTTTGGGTGGTCTCTTCTTTACATGGGTCATCCTACAGCTTTTCCCTCAACAAAAGTTAAGAATCATGATGAAAATGCATGGTCTTAGTGATGGACCATATTGGATGATTTCATATGGTTATTTTCTTGCCCTATCTGCAATTTACATGCTGTGTTTTGTGCTATTTGGTTCAGGCATTGGGTTAAAATTCTTTACAAAGAATGAGTACAGCATCCAATTCGTGTTATACTTCATCTATATAAATCTACAAATTTCGCTGGCATTTCTATTGGCTTCCATGTTTTCAAATGTTAAGACTGCTACAGTAACTGCATACATAGGGGTATTTGGAAGTGGGCTCTTAGCTGGTTCTCTTTTCCAATTTTTTCTTCAGGATACATCATTTCCAAGAGGGTGGATCATTGTTTTGGAATTGTATCCCGGTTTCAGTTTATATCGAGGTCTATATGAGTTTGCGCAAGCTGCCTTCAGTGCAGGTAAATTGGGGACTCATGGTATGCGGTGGGGAGATCTAAACAATAGCACAAATGGCATGAAGGAGGTCTTAATTATCATGTTTGTCGAATGGATATTGGTGCTTTTCTTTGCTTATTACATCGATCAAGTTTTCACGTCTGGAAGTGGGAAAAGTCCTTTCTTTTTCCTGAAAGGATTTCAGAAGAAGACACTTTCTTCTTTTCGGAAGCCTAGTTTGGGAAAGCAGGGATCTAAAGTTTTTATTCAGATGGATAAACCTGATGTTAGCCAAGAGAGGGAGAAGGTGGAGCAGCTGCTACTTGAACCGACTATTAATCAAGCAATCGTATGCGACAATCTAAAAAAGGTCTATCCCGGGAGGGATGGTAATCCAGATAAGTTTGCAGTAAGAGGCTTATCCCTTGCTTTGCCTAACGGGGAGTGCTTTGGTATGCTTGGTCCCAATGGTGCCGGGAAGACCTCCTTTATCAATATGATGATTGGCCTGACAAAGCCAACGGCCGGTACTGCATTTGTTCAAGGTCTGGACATAAGAACTCATATGAATGGAATATATACTAGCATGGGTGTCTGTCCACAACATGACTTGCTGTGGGAAACCCTGACAGGAAGAGAACACCTACTCTTTTATGGAAGACTTAAGAATCTTAAGGGTTCAGCCTTAACACAAGCAGTTGAAGAATCATTGATGAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAACAAGCTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCTAGAGTTGTTTACATGGATGAGCCAAGTACTGGATTAGATCCAGCATCAAGAAACAACTTGTGGAATGTCGTTAAGCGCGCGAAACGGGATCGTGCTATCATCCTCACCACACATTCCATGGAAGAGGCAGAGGTCTTATGTGATCGATTAGGAATATTCGTCGATGGAAGCTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTTTTCACAATGACAACAACTATGGATCACGAGAAGGATGTGGAGACAATGGTGCAGCAAATCTACCCGGCTGCTAAGAAGGTATACCATATCTCTGGAACTCAGAAGTTTGAGCTCCCCAAACAAGAGGTCCGCATAGCAAGCGTGTTCCAAGCGGTCGAAACTGCAAAGAGAAACTTCACGGTCTCGGCATGGGGTTTAGCTGACACCACACTAGAAGATGTATTCATCAAGGTTGCGCGTGACGCTCAGGCATTTGAGACATTGTCTTAG 2814 0.4268 MRNEANEPASFWTQANALLRKNLTYQKRNAKTNVRIIMYPFLLCLLLLLLQKLVDNQLNKDKYKCGCICTKSEGDQCLEKACGVEYSDLDQVGACAIPNPPEWPPVLQVPDPNYRAVATDFIPDSDLPNRSCRRNGSCPITMLFTGNNQSFGQILYRNMLPSNFTMNTSNVMTSLANDVLGSASKTETTNFLESAFFSGLPVYYLQQQCTKNSTFSFPLEIASFNLQQEVTCAQVLPLWRNSPSEVNNELYKGYRRGNPEKQINEIAAGYDFLNSNHNIYNVSIWYNSTYKNDTGFGPIGLARVPRSINLVSNAYLQYLMGPNTKMLFEFVKEMPKPETKVSFDLASLLGGLFFTWVILQLFPQQKLRIMMKMHGLSDGPYWMISYGYFLALSAIYMLCFVLFGSGIGLKFFTKNEYSIQFVLYFIYINLQISLAFLLASMFSNVKTATVTAYIGVFGSGLLAGSLFQFFLQDTSFPRGWIIVLELYPGFSLYRGLYEFAQAAFSAGKLGTHGMRWGDLNNSTNGMKEVLIIMFVEWILVLFFAYYIDQVFTSGSGKSPFFFLKGFQKKTLSSFRKPSLGKQGSKVFIQMDKPDVSQEREKVEQLLLEPTINQAIVCDNLKKVYPGRDGNPDKFAVRGLSLALPNGECFGMLGPNGAGKTSFINMMIGLTKPTAGTAFVQGLDIRTHMNGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLMSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKRDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARYGGTYVFTMTTTMDHEKDVETMVQQIYPAAKKVYHISGTQKFELPKQEVRIASVFQAVETAKRNFTVSAWGLADTTLEDVFIKVARDAQAFETLS 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211506g00011 937 Gene3D - 607 883 IPR027417 -
Stsc211506g00011 937 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Stsc211506g00011 937 CDD ABC_subfamily_A 619 840 - -
Stsc211506g00011 937 FunFam ABC transporter A family member 7 604 880 - -
Stsc211506g00011 937 SMART AAA_5 645 828 IPR003593 GO:0016887
Stsc211506g00011 937 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 852 IPR003439 GO:0005524
Stsc211506g00011 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 854 IPR027417 -
Stsc211506g00011 937 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 581 931 IPR026082 GO:0016020|GO:0055085|GO:0140359
Stsc211506g00011 937 Pfam ABC transporter 637 781 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211506g00011 Stsc-Chr211506 73971 85623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211506g00011 592 839 Calmodulin-binding Proteins AT2G36910 23.166 6.97e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211506g00011 - - gmx:100805474 1556.96