Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211505g00016 ATGGCCTCTCATTCTCCGAAAGGAGAATTAGGCCCTTTCATGAGTCATCTCATTCTCTTCCTCATTCTCATTCTCATCTCCATAATCAACCCTTCACACCAATCTGAATACAAGGAAGAAGACAAGTCGCGGTTCCTCCCTCCATTAAATCCGAGGCTCTCAAAAGCTTACACAGCACTCCAAGCATGGAAGCACGCAATAACCTCAGACCCAAAGAACATGACCCTCAACTGGTGCGGACCCCACGTATGCAACTACACCGGAGTCTACTGTGCACCAGCACCTGATGACCCCCACATATACACCGTTGCAGGAATAGACCTAAACCACGGCAAAATATCTGGTTCATTACCAGAACAACTTGGCCTCTTAACCGACCTATCACTGTTCCACATCAACTCTAACCGTTTTTGTGGCTCCCTTCCAACCTCCTTCAACGGCCTCAAACTCTTCTTCGAGCTTGACGTCAGCAACAACGATCTCTCAGGTCCATTTCCCGAAGTTGTGTTATGCCTCCCTTCGCTCAAATACCTGGACATAAGGTTCAACAACTTCTACGGAGATGTCCCCACGCGCCTCTTCGACCTCAAACTCGACGCGCTCTTCATCAACAACAACAACTTCCAATTCTCCTTGCCTGAGAATTTCGGTAACTCCCCGGCCTCGGTGGTTGTGTTCGCCAACAACAATTTGAGGGGATGTTTTCCGTCGAGTGTAGCGAAGATGAACAACACGCTGAACGAGATCATAATTACGAATAGCGGGATAACGGGTTGTTTGCCACGTGAGATAGGGTTGTTGGATAGAGTAACGGTTTTTGATGTGAGCTTCAACAATATCGTTGGGGAATTACCTGAATCGATTGAAGGGATGAAGAAGTTGGAACAGTTGAACGTGGCGCATAACATGCTATCTGGCACCATTCCCGAGAGTGTGTGCAACTTGCCCAGGCTGCAGAACTTTACGTACTCTTATAACTACTTCTGCGATGAATCTCCTGTGTGTTTGAAGCTTCCGGATAGTGATGATCGCAAGAACTGTATTCCTTATCGGCCGCTGCAACGCTCCCTTCAGGAATGTGCCGCTTTTCTTAAACATCCGGTTAATTGTGCTGCCTTTGGTTGCTCACCTCCACCTCCACCTCCACCTCCCCCGCCTCCTCCTCCACCTCCACCTCCACCACCGCCTCCTCCTCCTCCTCCACCTCCACCTCCACCACCACCTCCACCACCACCACCTCCTCCACCTCCGCCACCACCACCACCTCCTCCTCCTCCGCCACCACCACCACCTCCTCCTCCACCACCGCCGCTGCATCCCCCAACGCCATACTACCACTATCCGTGA 1347 0.51 MASHSPKGELGPFMSHLILFLILILISIINPSHQSEYKEEDKSRFLPPLNPRLSKAYTALQAWKHAITSDPKNMTLNWCGPHVCNYTGVYCAPAPDDPHIYTVAGIDLNHGKISGSLPEQLGLLTDLSLFHINSNRFCGSLPTSFNGLKLFFELDVSNNDLSGPFPEVVLCLPSLKYLDIRFNNFYGDVPTRLFDLKLDALFINNNNFQFSLPENFGNSPASVVVFANNNLRGCFPSSVAKMNNTLNEIIITNSGITGCLPREIGLLDRVTVFDVSFNNIVGELPESIEGMKKLEQLNVAHNMLSGTIPESVCNLPRLQNFTYSYNYFCDESPVCLKLPDSDDRKNCIPYRPLQRSLQECAAFLKHPVNCAAFGCSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLHPPTPYYHYP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211505g00016 448 Gene3D Ribonuclease Inhibitor 54 222 IPR032675 -
Stsc211505g00016 448 Pfam Leucine rich repeat N-terminal domain 57 91 IPR013210 -
Stsc211505g00016 448 PRINTS Proline rich extensin signature 394 411 - -
Stsc211505g00016 448 PRINTS Proline rich extensin signature 412 437 - -
Stsc211505g00016 448 PRINTS Proline rich extensin signature 377 393 - -
Stsc211505g00016 448 FunFam Leucine-rich repeat extensin-like protein 1 57 218 - -
Stsc211505g00016 448 SUPERFAMILY L domain-like 57 337 - -
Stsc211505g00016 448 Gene3D Ribonuclease Inhibitor 223 347 IPR032675 -
Stsc211505g00016 448 MobiDBLite consensus disorder prediction 379 435 - -
Stsc211505g00016 448 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211505g00016 Stsc-Chr211505 141754 143343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211505g00016 45 381 Leucine-rich Repeat extension Gene Families AT3G22800 68.437 8.36e-163 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211505g00016 - - gmx:100818195 601.668