Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211504g00004 ATGGTGGATAGGATGGTGAGGAAGGAGGTTGAACAAAATGATGAACAAGCTGTGACTGTGGCTTTCTATTCAGATGAGAAAGCTCAACGGAGGTTTTCAATGACCATGGTCACAAATGGCGAGGCACAAAAATTTGCAAGCTCTATGAAGGCTGCAACAGCAGAAGCAACATCCTCTCGTGGTGAGGCTAGGTCATCAGCTGTAATTCGAGCCGAAGAGATCCGGTCGGGTTTGCAAATGGAATACCCTAGTTTTGTGAAGTCATTAGTGAGATCACACGTGGCTAGTTGTTTCTGGATGGGTCTGCCTGTGGCATTCTGTAAGAAGCACTTGCCAGATAAGGATACGACGATGACTTTGGAAGATGAATCCGGCAAAGAATACAAGATGAAGTACATCGCATGCAAAACGGGATTGAGCGCAGGTTGGCGACAGTTTTCTACTGTGCACAAGTTGCAGGAGGGTGATGTCTTGGTGTTCCAGTTAATTGAACCTACCAAGTTTAAGATTTATATAATAAGAGCGGATAATTTGAGGGATGTAGATGGGGCGCTTTCGCTTATGAATCTAGACAGTTATGCAAGACAAAAGCAGAGAGATAAAGAAAACCAACATAATGATGCTTTAGAGACTAGTAATACAAAGAGAAAACCTGGAAAACCTGTCCCAATTGATGTCCAAAAGAAAAAGCGGACCGTGGTGTCAAAACCAAGTCCTAAATCCGTCCAACCGGCGCCATCCGAAAACGACAGCGAAGAAGCACTCTCAGAAGTATTTGAGGGGTTTAGAACGCTTGACTTCAAAGATGTCAAAGGATTTGAATATTTCAGCATCATAGTCGATGGCGTGCCATTAGATGCAGAGTTCCCTAATGAGGTTAGAAACAAATACTACAAGCTATGCCAGAGCCAACGCGCTTTTCTCCATGATAACCTCACCCGAGGGATGAACTACAAGCTAGTTGTTGGAATCATAACCGAAACTGTAAACATTGCGGACGCCATTAAAGTTAGTGTGCTAGCCACGCCACGATATGATTTCTCGAATTGGGACAAAACCCTGCTTGCCTTTGAGCATATGGGCATGAATGTTGAGTTCTTGAGGGTGAGGTTGTGGCGACTGGTGAGCATTGCATATGAAACTGATGATGCCTTAGAGACCAGAAAATACTTCCAGTATAAGAATCAACACTCGCGAGCAGATGATGAAATAAAGAATATGGAGTCCAAGCTGGAAGATTTGAAAGGAGCTTGTAATGATTTTAGCTCTTACATTAAGAGTTTGAAGCATAAAGCTGAAGGTCATCAAAACAAGTTTCAGAAAGAGGCTGGTGCTCCTTGA 1341 0.434 MVDRMVRKEVEQNDEQAVTVAFYSDEKAQRRFSMTMVTNGEAQKFASSMKAATAEATSSRGEARSSAVIRAEEIRSGLQMEYPSFVKSLVRSHVASCFWMGLPVAFCKKHLPDKDTTMTLEDESGKEYKMKYIACKTGLSAGWRQFSTVHKLQEGDVLVFQLIEPTKFKIYIIRADNLRDVDGALSLMNLDSYARQKQRDKENQHNDALETSNTKRKPGKPVPIDVQKKKRTVVSKPSPKSVQPAPSENDSEEALSEVFEGFRTLDFKDVKGFEYFSIIVDGVPLDAEFPNEVRNKYYKLCQSQRAFLHDNLTRGMNYKLVVGIITETVNIADAIKVSVLATPRYDFSNWDKTLLAFEHMGMNVEFLRVRLWRLVSIAYETDDALETRKYFQYKNQHSRADDEIKNMESKLEDLKGACNDFSSYIKSLKHKAEGHQNKFQKEAGAP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211504g00004 446 SUPERFAMILY DNA-binding pseudobarrel domain 79 176 IPR015300 -
Stsc211504g00004 446 CDD B3_DNA 83 174 IPR003340 GO:0003677
Stsc211504g00004 446 MobiDBLite consensus disorder prediction 196 253 - -
Stsc211504g00004 446 Coils Coil 390 417 - -
Stsc211504g00004 446 ProSiteProfiles B3 DNA-binding domain profile. 85 176 IPR003340 GO:0003677
Stsc211504g00004 446 MobiDBLite consensus disorder prediction 236 250 - -
Stsc211504g00004 446 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 39 177 IPR044837 -
Stsc211504g00004 446 Gene3D - 62 178 IPR015300 -
Stsc211504g00004 446 SMART B3_2 85 176 IPR003340 GO:0003677
Stsc211504g00004 446 Pfam B3 DNA binding domain 85 175 IPR003340 GO:0003677
Stsc211504g00004 446 MobiDBLite consensus disorder prediction 196 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211504g00004 Stsc-Chr211504 11478 15485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211504g00004 62 207 B3 DNA Binding Superfamily AT3G19184 46.622 4.48e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211504g00004 B3 5.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211504g00004 - - adu:107479414 768.074