Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211503g00009 ATGTCTTTAATTTATAGTTTAACATCTTACTTTCGTAATCTAAATAAGAAACAATTGCAGTATGATGATCTTGCGGAGCTGGAATGGTTGTCCAATTTCACGGAGGAGTCATTCTCCAGTGAAGACCTGCAGAGGATGCAGCTCATATCAGGTATGAAAGCTCGAAATGATTCCGTCTCTGAGGCCCGGGAATTCGACCACCAACTGGAGCCCAACCGAGCTAATAACTCAATACTCAACCCACAACTGTCGGTTCCAGCTAAGGCCCGAAGCAAACGCTCGCGTGGGCCTCCATGCAACTGGAATTCACGCCTCCTGGTGGTGTCGTCCCCAACCACGACATCTTCTTCCCCGTCGGAGCCCATAACACTTCCCAAGAAGCCCGTGGCAAGGAAGAAGGACAACAGAGATGAAGGTGGAGAGGGAAGAAAGTGCCTACACTGCGCCACGGACAAGACACCTCAGTGGCGAACAGGGCCCATGGGCCCGAAGACATTGTGCAATGCATGCGGAGTGAGGTATAAGTCGGGCCGGCTGGTGCCGGAGTATAGGCCGGCTGCCAGCCCGACTTTTGTACTGACAAAGCACTCGAACTCCCACCGGAAGGTGCTGGAGTTGCGGCGCCAAAAGGAGATGATGCGGGCCCAGCAAGAGCATCAGCAGCAACTGCTTCATCATCACCATCACCAGATGATGTTTGATGTCTCATCCAACGGTGAGGATTACTTGATTCATCACCAAGTGGGTCCCAATTTCGGGCACCTAATCTAG 771 0.5201 MSLIYSLTSYFRNLNKKQLQYDDLAELEWLSNFTEESFSSEDLQRMQLISGMKARNDSVSEAREFDHQLEPNRANNSILNPQLSVPAKARSKRSRGPPCNWNSRLLVVSSPTTTSSSPSEPITLPKKPVARKKDNRDEGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQEHQQQLLHHHHHQMMFDVSSNGEDYLIHHQVGPNFGHLI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211503g00009 256 PANTHER GATA TRANSCRIPTION FACTOR 21 217 - -
Stsc211503g00009 256 SMART GATA_3 139 189 IPR000679 GO:0006355|GO:0043565
Stsc211503g00009 256 FunFam GATA transcription factor 134 222 - -
Stsc211503g00009 256 MobiDBLite consensus disorder prediction 126 143 - -
Stsc211503g00009 256 MobiDBLite consensus disorder prediction 70 143 - -
Stsc211503g00009 256 ProSiteProfiles GATA-type zinc finger domain profile. 139 175 IPR000679 GO:0006355|GO:0043565
Stsc211503g00009 256 PIRSF Txn_fac_GATA_plant 4 237 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc211503g00009 256 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 140 203 - -
Stsc211503g00009 256 CDD ZnF_GATA 144 191 IPR000679 GO:0006355|GO:0043565
Stsc211503g00009 256 Gene3D - 124 222 IPR013088 GO:0006355|GO:0008270
Stsc211503g00009 256 MobiDBLite consensus disorder prediction 103 122 - -
Stsc211503g00009 256 ProSitePatterns GATA-type zinc finger domain. 145 170 IPR000679 GO:0006355|GO:0043565
Stsc211503g00009 256 Pfam GATA zinc finger 145 178 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211503g00009 Stsc-Chr211503 110593 111533 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211503g00009 22 256 C2C2-Gata Transcription Factor Family AT5G25830 57.414 1.37e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc211503g00009 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211503g00009 - - qsa:O6P43_019485 313.923