Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211503g00007 ATGGAAGCACAAGAGTTATTCCAGAACAACCTCTGCCAACAATTCCCCTCCGACAATTCCAATAACGCCCCTAATTCTGACCATTTCATTGTTGAGGAATTCTTTGACTTCTCCAATAACGATGATGCTGATGATGCACCTTTTATCTCCGACACCACCACCTTTGACTCCCTCACCGTCACCGGCAACTCCATTGATTCCTCCTCCACGGCTGCTGCCGTTCTTGATAGTGCCAATTCCTCTGCCTCCCACCCAAATACCCTCCTCCTCAACGCTCATGATACCCCTTTCTCCAGCGACCTTCCTGTCCCGTATGATGATCTTGTGGAGTTGGAATGGTTGTCCAATTTTACCGAAGAATCATTCTCAAGCGAGGAGGACATACAGAAGATGCAGCTGATATCAGGTATCAAAGTCCAAAATGACATCATATCCGAGGCTCATGACTTCATCCCGTCTGAGCAGCCCAACCGAATAATTAACCCAGTACTCAACCCAGAAATTTCAGTCCCAGCCAAGGCCCGCAGCAAGCGAACGAGAGGGCCTCCATGCAATTGGACCTCTCGCCTCCTAGCAGTCTCTCCATCTGAGTCCGTGATTGCAGCCCCGAAGAAGCATATATCACGCAAGAAGGAGAACAGAGATGGAGCAGAGAGGAGGAAGTGCTTACATTGTGCAACTGAGAAGACGCCGCAGTGGCGGACAGGGCCCATGGGACCTAAGACGTTGTGCAATGCATGTGGAGTAAGGTATAAGTCCGGCCGGTTGGTGCCCGAATACAGGCCTGCTGCGAGCCCAACGTTTGTTCTAACAAAGCACTCTAACTCGCACCGGAAAGTTATGGAGCTGCGTCGCCAAAAAGAGATGATGATGCAAACGCATCAGGAACATCAGCAGCAGCAGCAATTGCTACATCATCATCATCATCCTCAGAGGATGATATTTGATGTTTCACATAACAGTGATGATTACTTCATCCATCAACACATGGTCCCTGATTTCCGACACCTGATGTAG 1017 0.4926 MEAQELFQNNLCQQFPSDNSNNAPNSDHFIVEEFFDFSNNDDADDAPFISDTTTFDSLTVTGNSIDSSSTAAAVLDSANSSASHPNTLLLNAHDTPFSSDLPVPYDDLVELEWLSNFTEESFSSEEDIQKMQLISGIKVQNDIISEAHDFIPSEQPNRIINPVLNPEISVPAKARSKRTRGPPCNWTSRLLAVSPSESVIAAPKKHISRKKENRDGAERRKCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMMQTHQEHQQQQQLLHHHHHPQRMIFDVSHNSDDYFIHQHMVPDFRHLM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211503g00007 338 Coils Coil 280 300 - -
Stsc211503g00007 338 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Stsc211503g00007 338 Gene3D - 217 307 IPR013088 GO:0006355|GO:0008270
Stsc211503g00007 338 PANTHER GATA TRANSCRIPTION FACTOR 19 299 - -
Stsc211503g00007 338 FunFam GATA transcription factor 211 301 - -
Stsc211503g00007 338 MobiDBLite consensus disorder prediction 1 23 - -
Stsc211503g00007 338 CDD ZnF_GATA 221 268 IPR000679 GO:0006355|GO:0043565
Stsc211503g00007 338 PIRSF Txn_fac_GATA_plant 1 312 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc211503g00007 338 SMART GATA_3 216 266 IPR000679 GO:0006355|GO:0043565
Stsc211503g00007 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 280 - -
Stsc211503g00007 338 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Stsc211503g00007 338 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211503g00007 Stsc-Chr211503 84738 86262 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211503g00007 23 338 C2C2-Gata Transcription Factor Family AT4G32890 45.783 2.08e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc211503g00007 GATA 7.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211503g00007 - - pdul:117614806 328.946