LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211502g00023	ATGGAAGATTACGCTGCCAGCAGCGATGATGAATACCGTTACTCCGATCAGGAAGACTCCGTCGAAGCCTTCGATAACGATGACAACGACTATCAATTAGTCTCTTCCAAGGGTCCTTCTACTCAGGTGATTACCAAGGAGTCATTGCTAGCTGCACAGAAGGAGGATTTGCGCAGGGTGATGGACATGCTATCGGTGAGGGAGCAACATGCACGTACCCTGCTTATTTTTCACCGTTGGGATGTGGAGAAGCTGTTTGCCGTGTTAGTGGACAGGGGAAAACATTTTCTGTTTTCTGAAGCTGGTGTTACAGTGGATGAAAATCGTGACTCTAATTCGTCAGCTGCTCCTTCTACAATAATGTGCGAAATTTGCATAGAAGATATTCCTAGCGACGAAACAACAAAAATGGACTGCGGTCACTGTTTTTGCAATGGCTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCACACAAATGTTATTCCATTTGCGATGAAGCTGTTGTCAGAACTCTTCTTAGCAAAAAGCACCCTGATATGGCGGAGAAATATGAACGCTTTCTCCTAGAATCCTATATTGAAGACAACAAGAGAGTTAAATGGTGCCCAAGTACGCCTCATTGTGGGAATGCAATACGTGTCGAGGACGATGAATTATGTGAGGTAGAATGTTCATGCGGTTTACAGTTTTGCTTTAGTTGCTTGTCAGAAGCACATTCTCCATGCTCATGTTTGATGTGGGAGCTTTGGGCCAAAAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACCAAGCCTTGTCCAAAGTGCCACAAACCGGTCGAGAAAAATGGTGGTTGTAACTTGGTTAGCTGTATATGCGGTCAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGTCGAGAGCATACCTGGTCAAGCATTGCTGGTCATAGCTGTGGTCGCTATAAAGAGCAAGAAAAAACAGCTGAAAGGGCAAAGAGGGATCTTTATCGCTATATGCATTATCATAATCGTTACAAAGCTCACACAGACTCCTTTAAGCTTGAGAGTAAACTGAAAGAAACTATACAAGAGAAGATTGCTGTCTCAGAAGAAAAGGATTCTACACTAAGGGATTATAGTTGGGTAAATAATGGGCTCTCTAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCGTATGCATTTGCATTTTACATGTTTGGGGACGAGCTATTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAGCAGCAGCAGCTTGAGTCCAACGTTGAAAAGCTCTCCAAAATTTTAGAGGAGCCTTTTGAAACTTTTGAAGATGATAAAGTCATGGAGATAAGGATGCAGATAATTAATCTGTCTACTATTATTGACAAACTTTGCCAAAAAATGTATGAGTGTATTGAGAATGATTTACTGGGTTCCCTCCATCTTGGCGTTCACAATATTGCTCCATACAAATCGAAGGGGATCGAGAGGGCATCAGAACTTTCAGTTTGTTGGACCAATGACGCTAATAATACCGTTTGA	1605	0.4187	MEDYAASSDDEYRYSDQEDSVEAFDNDDNDYQLVSSKGPSTQVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVLVDRGKHFLFSEAGVTVDENRDSNSSAAPSTIMCEICIEDIPSDETTKMDCGHCFCNGCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSKKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQEKIAVSEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLESNVEKLSKILEEPFETFEDDKVMEIRMQIINLSTIIDKLCQKMYECIENDLLGSLHLGVHNIAPYKSKGIERASELSVCWTNDANNTV	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211502g00023	534	SUPERFAMILY	RING/U-box	193	261	-	-
	Stsc211502g00023	534	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	48	400	IPR031127	GO:0004842\|GO:0016567
	Stsc211502g00023	534	SMART	ibrneu5	193	255	IPR002867	GO:0008270
	Stsc211502g00023	534	SMART	ibrneu5	263	328	IPR002867	GO:0008270
	Stsc211502g00023	534	Pfam	IBR domain, a half RING-finger domain	193	255	IPR002867	GO:0008270
	Stsc211502g00023	534	SUPERFAMILY	RING/U-box	118	205	-	-
	Stsc211502g00023	534	CDD	Rcat_RBR_ARI1-like	276	329	-	-
	Stsc211502g00023	534	Gene3D	-	251	498	-	-
	Stsc211502g00023	534	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	116	208	IPR013083	-
	Stsc211502g00023	534	ProSiteProfiles	Zinc finger RING-type profile.	122	170	IPR001841	-
	Stsc211502g00023	534	CDD	BRcat_RBR_ANKIB1	200	264	-	-
	Stsc211502g00023	534	ProSiteProfiles	TRIAD supradomain profile.	118	332	IPR044066	-
	Stsc211502g00023	534	FunFam	RBR-type E3 ubiquitin transferase	251	498	-	-
	Stsc211502g00023	534	Pfam	Ariadne domain	332	532	IPR045840	-
	Stsc211502g00023	534	CDD	RING-HC_RBR_TRIAD1	121	171	-	-
	Stsc211502g00023	534	FunFam	RBR-type E3 ubiquitin transferase	116	207	-	-
	Stsc211502g00023	534	MobiDBLite	consensus disorder prediction	1	28	-	-
	Stsc211502g00023	534	SUPERFAMILY	RING/U-box	263	320	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211502g00023	Stsc-Chr211502	130834	135082	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211502g00023	61	522	ARIADNE family	AT2G16090	74.624	0.0	739

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211502g00023	K11968		-	gmx:100783343	991.104