Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211501g00020 ATGCCGGGATCGGAGAATGGGACGCCAACAGCGGCGTCTATGCCGGCGACACCGGATACTCCGGGCGGGCCACTGTTCACATCGCTGCGAGTGGACTCACTGACACACGAAGCATCGTTCACAATGGAAAGGTGCGGCAAGTGTTTGCCAAGTGCCATGAGCAAGAGCCATGGTTGCATCACTGATTTCACTGTTGGTGTTCCAATGCCAAATGTCTCCCTTGCTCAAAAGGTAGGAGCAGAGTTTGTTGGAACATTCATACTCATATATGCAGCAACAGCAGGGCCCATTGTGAACACCAAGTACAAGGGAGCTGAGTCTCTAATCGGCAACGCAGCATGTGCAGGCCTCACTGTCATGTTCATCATCCTCTCCATTGGCCACATCTCCGGCGCACATCTCAATCCATCCCTCACCATTGCCTTCGCTGCATTCCGCCACTTCCCCTGGACTCATGTCCCTGCCTACATTGCCGCTCAAGTCTCTGCTTCCATCTGTGCCTGCTTTGCTCTCAAGGGCGTTTACCACCCTTACCTCACCGGCGGCGTCACCATCCCTTCTGACATCACAGTTGGGCAGGCCTTTGCCACTGAGTTCATCATCACTTTCATTCTCATGTTTGTTGTAACCGCTGTCGCCACTGATACTCGTGCCGTTGGAGAGTTGGCCGGTATAGCCGTTGGTGCCACTGTTTTGCTCAACATCCTCATTTCAGGGCCAACAAGTGGAGGTTCGATGAACCCGGTTCGAACATTGGGTCCAGCCGTAGCGGCGGGGAATTACAAGCATATATGGCTGTACTTGGTGGCGCCGACATTGGGTGCTCTTTCAGGCGCCGGTGTTTATACGCTGGTGAAGCTGCAGGAGAGCGAGGCTCAGCCACCGCGACAGACTAGGAGCTTCCGTGACAGGGCTGGGTAG 921 0.5472 MPGSENGTPTAASMPATPDTPGGPLFTSLRVDSLTHEASFTMERCGKCLPSAMSKSHGCITDFTVGVPMPNVSLAQKVGAEFVGTFILIYAATAGPIVNTKYKGAESLIGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTHVPAYIAAQVSASICACFALKGVYHPYLTGGVTIPSDITVGQAFATEFIITFILMFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWLYLVAPTLGALSGAGVYTLVKLQESEAQPPRQTRSFRDRAG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211501g00020 306 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Stsc211501g00020 306 MobiDBLite consensus disorder prediction 1 15 - -
Stsc211501g00020 306 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 Pfam Major intrinsic protein 72 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 SUPERFAMILY Aquaporin-like 73 295 IPR023271 -
Stsc211501g00020 306 Gene3D Glycerol uptake facilitator protein. 69 300 IPR023271 -
Stsc211501g00020 306 FunFam Aquaporin NIP2-1 64 297 - -
Stsc211501g00020 306 MobiDBLite consensus disorder prediction 1 25 - -
Stsc211501g00020 306 CDD MIP 76 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211501g00020 306 PANTHER AQUAPORIN NIP2-1 45 291 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211501g00020 Stsc-Chr211501 106931 111492 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211501g00020 25 302 Major Intrinsic Protein MIP AT4G10380 73.310 4.91e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211501g00020 K09874 - gmx:100775229 513.457