Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211501g00015 ATGAGCTCCAAAGATCCCCACACTGATTCACTTGATGCATTGAAGTTTAAAATGTCTGCTCAAAAGGATTCAGACAAGTTCTTCATGTCCATCAGTGAAAGAGAGAAAAAGCCAGTTGATGTTTTACGTGCGTTGTACGATGGTTGCATTGCTGGAGGTGTTGCTGGAGTAGTTGTAGAAACAGCTTTGTACCCCATTGATACCATCAAAACTCGATTACAGGTTGCTCGGGGCGGAGGCCAAATTATCTTGAAGGGTCTATATTCAGGGTTGGCCGGAAATATTGTGGGTGTCTTACCAGCTTCTGCGATTTTTGTCGGTGTGTATGAACCCACAAAGCAAAAATTGCTACGGTCCTTTCCTGAGAATCTCAGCGCTGTAGCTCACTTTGCTGCAGGTGCCATTGCAGGAGCTGCATCTTCTCTTGTTCGTGTTCCAACTGAGGTTGTTAAGCAAAGGATGCAAATGGGTCAATTCAAATCAGCACCAGCTGCCGTGCGTCTTATCGTTGCCAATGAGGGTTTTAAAGGCCTTTATGCGGGATATGGGTCTTTCTTATTGCGAGATCTACCATTCGATGCCATACAATTCTGTATATATGAGCAGCTCCGGATCGGTTATAAGCTAGCAGCGAAAAGAGACCTAAACGATCCAGAAAATGCTATGCTTGGGGCGTTTGCTGGTGCCATAACTGGAGCAGTGACAACTCCTCTTGATGTAGTAAAAACAAGACTTATGGTTCAGGGATCACAAAACCATTATAAAGGAATTTATGATTGTGTCAGCACAATAGTTAAAGAAGAAGGAACTCATGCTCTTTTTAAGGGAATGGGGCCAAGAGTGCTGTGGATAGGAATTGGTGGTTCAATATTTTTTGGTGTTCTTGAGAAGACAAAGCAAATTCTTGCTCAGAGGCATCCAAAAGCTGAGCTTCACAACTGA 942 0.4363 MSSKDPHTDSLDALKFKMSAQKDSDKFFMSISEREKKPVDVLRALYDGCIAGGVAGVVVETALYPIDTIKTRLQVARGGGQIILKGLYSGLAGNIVGVLPASAIFVGVYEPTKQKLLRSFPENLSAVAHFAAGAIAGAASSLVRVPTEVVKQRMQMGQFKSAPAAVRLIVANEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAKRDLNDPENAMLGAFAGAITGAVTTPLDVVKTRLMVQGSQNHYKGIYDCVSTIVKEEGTHALFKGMGPRVLWIGIGGSIFFGVLEKTKQILAQRHPKAELHN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211501g00015 313 SUPERFAMILY Mitochondrial carrier 49 296 IPR023395 -
Stsc211501g00015 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Stsc211501g00015 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 115 IPR018108 -
Stsc211501g00015 313 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 47 313 - -
Stsc211501g00015 313 Gene3D Mitochondrial carrier domain 45 312 IPR023395 -
Stsc211501g00015 313 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Stsc211501g00015 313 Pfam Mitochondrial carrier protein 48 118 IPR018108 -
Stsc211501g00015 313 Pfam Mitochondrial carrier protein 219 304 IPR018108 -
Stsc211501g00015 313 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 30 309 - -
Stsc211501g00015 313 PRINTS Mitochondrial carrier protein signature 48 61 IPR002067 GO:0055085
Stsc211501g00015 313 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Stsc211501g00015 313 PRINTS Mitochondrial carrier protein signature 179 197 IPR002067 GO:0055085
Stsc211501g00015 313 PRINTS Mitochondrial carrier protein signature 61 75 IPR002067 GO:0055085
Stsc211501g00015 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211501g00015 Stsc-Chr211501 88352 92246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211501g00015 132 307 Chloroplast and Mitochondria Gene Families AT1G07030 32.240 8.27e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211501g00015 K15111 - gmx:100800051 484.182