LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211501g00006	ATGGGGTGTGTTCAGGCCAAGACACTTGAAGGTCCTGGCCATGAACCTAAGGGATTAGACAGGCTCAAATTGGAAAATGGGTATGTTTCAAATTCTGATTTTGCTGCTCACAGAAGATCCACTGGTCAAAGGTATGAACCTATGGAGGATGCTAATGGTATTGGTACGCATCATCAGAAGAGAGAACCTCAACCAAGAAACCGTACAAGAGTTGATGAGCCTGCTGCTGCTGTTCCTGGTGGCAACAATGGTGAAAGTGGCAGGGGGAAAGGGGGTGTTGCTAGAGAGAGGAAGAAGAGAGAGTTGGCAAAGAAGAAGACTTTTGAGGATGATTATGTGATGGTTGATGGATGGCCCAAATGGCTAGTTGATAATGTTCCTCCTCAAGTCTTTGCTGGATTGGTCCCAAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTAGGACAAGGAACATACAGCAATGTTTATAAAGCTCTAGATCGTGAGACCAGGGAAATTGTTGCCCTAAAAAAGGTCCGCTTCAATACATCAGAGCCCGAAAGCATTAAGTTTATGGCAAGAGAAATCATGATACTACAAAGATTGGATCATCCTAATGTTCTAAAACTTAAAGGATTAGCAACTTCAAGAATGCAGTACAGTATATACCTAGTTTTTGAATTCATGCAAACCGATTTGTCAAGAATTATTTCTCATTCTGAAGAGAGGCTAACCGAGCCACAGCATTGCCATGAGAGGGGAATTTTACATCGAGATATAAAGGGATCAAACCTTTTGATTGATAAACATGGAATGCTTAAGATTGCAGATTTTGGGCTTGCCAACTATTATAGTCCAAACCAAGAGCATCCTCTCACAAGCCGGGTCGTGACACTGTGGTATAGAGCTCCTGAGTTGCTGTTAGGTTCCACGGATTATGGAGTTGGTATCGATCTATGGAGTGCCGGATGCCTCCTTGCAGAAATGTTCACAGGAATTCCACTCATGCCTGGCAGAACTGAGGTTGAGCAACTTCATAGAATTTTCAGATTATGTGGCACACCATCAGAGGAGTATTGGAAAAAGTTTAAAGTCTCTGCATCATTTAGACCACCAAAGTCGTATAGACCGAGCTTTCTAGAAACTTTCAGGGATCTCCCTCCATCTTCTTTGGGGCTTTTATGTAGCCTCCTTGCTTTGGAACCGACATTCCGTGGAACTGCATCCAAAGCTCTTAACAATCCGTTTTTCTTTACAAGCCCCTTGGCCTGTGATCTCTCTGGTTTGCCTGTAATCCACAGAGAAGAAGATGAAATTGATCAAGCCAAAGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATACCTGGAGCGTCGCAAGAGTTTAGCTCCCAAGAGGCAGATAGAACATACTGTGTCTAACAAGGAGGATTCAGGAAGGAATGTAGAACCTGAAACTTACATTCCAAGCGAAGAACCGGGTAGCGCAACCACAAGCAGTACCTCATCTAGTGTAAACCCAGCCATGGCTAAGGAGCAGTCATCCTTATCTCCCTTTCCCCTTTTGGCTTCAGATGAAAAAGTGGCTCCAAAAGTCCATCACCATGGCAATGTTGGTGAAAATACAAGGTACCTTCCTCCATTACCCAAGTCAAAACCGAAAGCAACCAAGAATGATGACTACAGCAGATTCAGTTTCAGGAGTGCTTCTACCAGAGAATTTAGAAACTTCAAGAGGGATGACTATTTACTCTTCGAAATTGATTAG	1761	0.4321	MGCVQAKTLEGPGHEPKGLDRLKLENGYVSNSDFAAHRRSTGQRYEPMEDANGIGTHHQKREPQPRNRTRVDEPAAAVPGGNNGESGRGKGGVARERKKRELAKKKTFEDDYVMVDGWPKWLVDNVPPQVFAGLVPRSAESYKMIDKVGQGTYSNVYKALDRETREIVALKKVRFNTSEPESIKFMAREIMILQRLDHPNVLKLKGLATSRMQYSIYLVFEFMQTDLSRIISHSEERLTEPQHCHERGILHRDIKGSNLLIDKHGMLKIADFGLANYYSPNQEHPLTSRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFTGIPLMPGRTEVEQLHRIFRLCGTPSEEYWKKFKVSASFRPPKSYRPSFLETFRDLPPSSLGLLCSLLALEPTFRGTASKALNNPFFFTSPLACDLSGLPVIHREEDEIDQAKEQIKYMNSKIRRSRTYLERRKSLAPKRQIEHTVSNKEDSGRNVEPETYIPSEEPGSATTSSTSSSVNPAMAKEQSSLSPFPLLASDEKVAPKVHHHGNVGENTRYLPPLPKSKPKATKNDDYSRFSFRSASTREFRNFKRDDYLLFEID	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211501g00006	586	Gene3D	Phosphorylase Kinase; domain 1	134	230	-	-
	Stsc211501g00006	586	ProSiteProfiles	Protein kinase domain profile.	142	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc211501g00006	586	Coils	Coil	426	446	-	-
	Stsc211501g00006	586	MobiDBLite	consensus disorder prediction	531	561	-	-
	Stsc211501g00006	586	FunFam	probable serine/threonine-protein kinase At1g54610	129	224	-	-
	Stsc211501g00006	586	MobiDBLite	consensus disorder prediction	39	69	-	-
	Stsc211501g00006	586	FunFam	Mitogen-activated protein kinase	238	421	-	-
	Stsc211501g00006	586	MobiDBLite	consensus disorder prediction	455	480	-	-
	Stsc211501g00006	586	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	249	261	IPR008271	GO:0004672\|GO:0006468
	Stsc211501g00006	586	Pfam	Protein kinase domain	142	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc211501g00006	586	MobiDBLite	consensus disorder prediction	489	511	-	-
	Stsc211501g00006	586	PANTHER	CELL DIVISION PROTEIN KINASE	140	416	-	-
	Stsc211501g00006	586	SUPERFAMILY	Protein kinase-like (PK-like)	137	415	IPR011009	-
	Stsc211501g00006	586	SMART	serkin_6	142	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc211501g00006	586	MobiDBLite	consensus disorder prediction	455	511	-	-
	Stsc211501g00006	586	Gene3D	Transferase(Phosphotransferase) domain 1	231	470	-	-
	Stsc211501g00006	586	MobiDBLite	consensus disorder prediction	1	100	-	-
	Stsc211501g00006	586	ProSitePatterns	Protein kinases ATP-binding region signature.	148	171	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211501g00006	Stsc-Chr211501	24892	28393	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211501g00006	127	444	Core Cell Cycle Gene Families	AT5G10270	40.688	7.56e-78	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Stsc211501g00006		Pkinase	3.9e-57	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211501g00006	K08819		-	gmx:100776854	782.326